Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC29.58■■■□□ 2.33
COL4A1P02462 SNAI3-AS1-204ENST00000567997 2048 ntBASIC29.58■■■□□ 2.33
COL4A1P02462 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC29.57■■■□□ 2.32
COL4A1P02462 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC29.57■■■□□ 2.32
COL4A1P02462 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL4A1P02462 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL4A1P02462 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC29.57■■■□□ 2.32
COL4A1P02462 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL4A1P02462 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL4A1P02462 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
COL4A1P02462 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
COL4A1P02462 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
COL4A1P02462 KRT18P10-201ENST00000388836 1287 ntBASIC29.56■■■□□ 2.32
COL4A1P02462 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC29.56■■■□□ 2.32
COL4A1P02462 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC29.56■■■□□ 2.32
COL4A1P02462 KRT125P-201ENST00000546827 989 ntBASIC29.55■■■□□ 2.32
COL4A1P02462 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
COL4A1P02462 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC29.54■■■□□ 2.32
COL4A1P02462 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC29.54■■■□□ 2.32
COL4A1P02462 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
COL4A1P02462 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC29.53■■■□□ 2.32
COL4A1P02462 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL4A1P02462 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC29.53■■■□□ 2.32
COL4A1P02462 AC131281.2-201ENST00000520478 145 ntBASIC29.53■■■□□ 2.32
COL4A1P02462 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL4A1P02462 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC29.52■■■□□ 2.32
COL4A1P02462 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC29.51■■■□□ 2.31
COL4A1P02462 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
COL4A1P02462 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC29.51■■■□□ 2.31
COL4A1P02462 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
COL4A1P02462 TSPY9P-201ENST00000440215 945 ntBASIC29.5■■■□□ 2.31
COL4A1P02462 TSPY11P-201ENST00000442607 1045 ntBASIC29.5■■■□□ 2.31
COL4A1P02462 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL4A1P02462 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC29.5■■■□□ 2.31
COL4A1P02462 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
COL4A1P02462 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC29.5■■■□□ 2.31
COL4A1P02462 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
COL4A1P02462 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
COL4A1P02462 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC29.49■■■□□ 2.31
COL4A1P02462 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
COL4A1P02462 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
COL4A1P02462 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
COL4A1P02462 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC29.48■■■□□ 2.31
COL4A1P02462 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
COL4A1P02462 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC29.48■■■□□ 2.31
COL4A1P02462 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC29.48■■■□□ 2.31
COL4A1P02462 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
COL4A1P02462 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
COL4A1P02462 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
COL4A1P02462 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC29.47■■■□□ 2.31
COL4A1P02462 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
COL4A1P02462 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
COL4A1P02462 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
COL4A1P02462 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC29.46■■■□□ 2.31
COL4A1P02462 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC29.45■■■□□ 2.31
COL4A1P02462 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
COL4A1P02462 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
COL4A1P02462 AC096887.2-201ENST00000623443 1957 ntBASIC29.44■■■□□ 2.3
COL4A1P02462 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC29.44■■■□□ 2.3
COL4A1P02462 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
COL4A1P02462 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
COL4A1P02462 TRIR-202ENST00000588213 841 ntTSL 3 BASIC29.44■■■□□ 2.3
COL4A1P02462 AC092028.1-203ENST00000608262 953 ntBASIC29.44■■■□□ 2.3
COL4A1P02462 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC29.43■■■□□ 2.3
COL4A1P02462 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
COL4A1P02462 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC29.43■■■□□ 2.3
COL4A1P02462 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC29.43■■■□□ 2.3
COL4A1P02462 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC29.43■■■□□ 2.3
COL4A1P02462 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC29.43■■■□□ 2.3
COL4A1P02462 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC29.43■■■□□ 2.3
COL4A1P02462 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
COL4A1P02462 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC29.42■■■□□ 2.3
COL4A1P02462 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL4A1P02462 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL4A1P02462 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
COL4A1P02462 PKM-203ENST00000389093 2279 ntTSL 5 BASIC29.42■■■□□ 2.3
COL4A1P02462 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A1P02462 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC29.41■■■□□ 2.3
COL4A1P02462 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A1P02462 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A1P02462 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A1P02462 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC29.41■■■□□ 2.3
COL4A1P02462 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A1P02462 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL4A1P02462 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC29.4■■■□□ 2.3
COL4A1P02462 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC29.4■■■□□ 2.3
COL4A1P02462 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC29.4■■■□□ 2.3
COL4A1P02462 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC29.4■■■□□ 2.3
COL4A1P02462 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC29.4■■■□□ 2.3
COL4A1P02462 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC29.4■■■□□ 2.3
COL4A1P02462 AC011551.1-201ENST00000614101 683 ntBASIC29.4■■■□□ 2.3
COL4A1P02462 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC29.4■■■□□ 2.3
COL4A1P02462 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL4A1P02462 AF131216.4-201ENST00000638924 1588 ntBASIC29.4■■■□□ 2.3
COL4A1P02462 ERN1-208ENST00000606895 2068 ntBASIC29.39■■■□□ 2.3
COL4A1P02462 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC29.39■■■□□ 2.3
COL4A1P02462 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC29.39■■■□□ 2.3
COL4A1P02462 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
COL4A1P02462 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL4A1P02462 AC008406.3-201ENST00000620001 1374 ntBASIC29.38■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms