Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
UPK3AO75631 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPK3AO75631 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.25■□□□□ 0.99
UPK3AO75631 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPK3AO75631 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPK3AO75631 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
UPK3AO75631 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
UPK3AO75631 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
UPK3AO75631 AC129492.7-201ENST00000622992 756 ntBASIC21.24■□□□□ 0.99
UPK3AO75631 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.24■□□□□ 0.99
UPK3AO75631 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.24■□□□□ 0.99
UPK3AO75631 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.24■□□□□ 0.99
UPK3AO75631 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
UPK3AO75631 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPK3AO75631 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
UPK3AO75631 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
UPK3AO75631 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
UPK3AO75631 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
UPK3AO75631 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.22■□□□□ 0.99
UPK3AO75631 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.22■□□□□ 0.99
UPK3AO75631 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
UPK3AO75631 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
UPK3AO75631 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.22■□□□□ 0.99
UPK3AO75631 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UPK3AO75631 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UPK3AO75631 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.21■□□□□ 0.99
UPK3AO75631 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
UPK3AO75631 DUX4L9-201ENST00000449051 1259 ntBASIC21.21■□□□□ 0.99
UPK3AO75631 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UPK3AO75631 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
UPK3AO75631 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.21■□□□□ 0.99
UPK3AO75631 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.21■□□□□ 0.99
UPK3AO75631 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UPK3AO75631 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
UPK3AO75631 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UPK3AO75631 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
UPK3AO75631 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
UPK3AO75631 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
UPK3AO75631 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
UPK3AO75631 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
UPK3AO75631 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.2■□□□□ 0.98
UPK3AO75631 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.2■□□□□ 0.98
UPK3AO75631 AL139125.2-201ENST00000623134 1869 ntBASIC21.2■□□□□ 0.98
UPK3AO75631 AC018755.3-202ENST00000596210 929 ntBASIC21.19■□□□□ 0.98
UPK3AO75631 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UPK3AO75631 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
UPK3AO75631 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UPK3AO75631 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
UPK3AO75631 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
UPK3AO75631 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
UPK3AO75631 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK3AO75631 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK3AO75631 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UPK3AO75631 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.18■□□□□ 0.98
UPK3AO75631 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK3AO75631 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.18■□□□□ 0.98
UPK3AO75631 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK3AO75631 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK3AO75631 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK3AO75631 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
UPK3AO75631 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK3AO75631 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK3AO75631 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK3AO75631 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UPK3AO75631 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
UPK3AO75631 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UPK3AO75631 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UPK3AO75631 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UPK3AO75631 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.16■□□□□ 0.98
UPK3AO75631 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
UPK3AO75631 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK3AO75631 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK3AO75631 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.15■□□□□ 0.98
UPK3AO75631 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK3AO75631 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UPK3AO75631 AC004987.1-201ENST00000428627 508 ntBASIC21.15■□□□□ 0.98
UPK3AO75631 DUX4L18-201ENST00000553347 1267 ntBASIC21.15■□□□□ 0.98
UPK3AO75631 MIR6765-201ENST00000614092 87 ntBASIC21.15■□□□□ 0.98
UPK3AO75631 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK3AO75631 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UPK3AO75631 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
UPK3AO75631 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
UPK3AO75631 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.14■□□□□ 0.97
UPK3AO75631 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.14■□□□□ 0.97
UPK3AO75631 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
UPK3AO75631 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.14■□□□□ 0.97
UPK3AO75631 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UPK3AO75631 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
UPK3AO75631 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UPK3AO75631 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.13■□□□□ 0.97
UPK3AO75631 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UPK3AO75631 ATP5G2P3-201ENST00000429083 425 ntBASIC21.13■□□□□ 0.97
UPK3AO75631 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.13■□□□□ 0.97
UPK3AO75631 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.13■□□□□ 0.97
UPK3AO75631 AC012354.3-201ENST00000623734 483 ntBASIC21.13■□□□□ 0.97
UPK3AO75631 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UPK3AO75631 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UPK3AO75631 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UPK3AO75631 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
UPK3AO75631 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms