Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AL451085.2-201ENST00000605085 799 ntBASIC30.33■■■□□ 2.45
CACNA1FO60840 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CACNA1FO60840 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC30.33■■■□□ 2.45
CACNA1FO60840 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.33■■■□□ 2.45
CACNA1FO60840 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CACNA1FO60840 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
CACNA1FO60840 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.32■■■□□ 2.44
CACNA1FO60840 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC30.32■■■□□ 2.44
CACNA1FO60840 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CACNA1FO60840 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CACNA1FO60840 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC30.32■■■□□ 2.44
CACNA1FO60840 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.31■■■□□ 2.44
CACNA1FO60840 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CACNA1FO60840 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CACNA1FO60840 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC30.31■■■□□ 2.44
CACNA1FO60840 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CACNA1FO60840 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
CACNA1FO60840 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CACNA1FO60840 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
CACNA1FO60840 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC30.29■■■□□ 2.44
CACNA1FO60840 BHLHE23-202ENST00000612929 1109 ntBASIC30.29■■■□□ 2.44
CACNA1FO60840 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CACNA1FO60840 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.28■■■□□ 2.44
CACNA1FO60840 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CACNA1FO60840 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
CACNA1FO60840 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
CACNA1FO60840 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CACNA1FO60840 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC30.27■■■□□ 2.44
CACNA1FO60840 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC30.26■■■□□ 2.44
CACNA1FO60840 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CACNA1FO60840 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CACNA1FO60840 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CACNA1FO60840 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
CACNA1FO60840 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
CACNA1FO60840 LONRF2P2-201ENST00000439212 571 ntBASIC30.26■■■□□ 2.43
CACNA1FO60840 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CACNA1FO60840 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CACNA1FO60840 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CACNA1FO60840 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
CACNA1FO60840 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CACNA1FO60840 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
CACNA1FO60840 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
CACNA1FO60840 AC011551.1-201ENST00000614101 683 ntBASIC30.25■■■□□ 2.43
CACNA1FO60840 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CACNA1FO60840 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC30.25■■■□□ 2.43
CACNA1FO60840 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CACNA1FO60840 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC30.25■■■□□ 2.43
CACNA1FO60840 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CACNA1FO60840 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC30.25■■■□□ 2.43
CACNA1FO60840 AC103834.1-201ENST00000520383 144 ntBASIC30.24■■■□□ 2.43
CACNA1FO60840 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CACNA1FO60840 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CACNA1FO60840 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CACNA1FO60840 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CACNA1FO60840 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CACNA1FO60840 MIR4281-201ENST00000580852 62 ntBASIC30.24■■■□□ 2.43
CACNA1FO60840 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.24■■■□□ 2.43
CACNA1FO60840 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC30.23■■■□□ 2.43
CACNA1FO60840 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CACNA1FO60840 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC30.23■■■□□ 2.43
CACNA1FO60840 AC009299.2-201ENST00000482477 511 ntBASIC30.23■■■□□ 2.43
CACNA1FO60840 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CACNA1FO60840 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
CACNA1FO60840 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CACNA1FO60840 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.22■■■□□ 2.43
CACNA1FO60840 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.22■■■□□ 2.43
CACNA1FO60840 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC30.21■■■□□ 2.43
CACNA1FO60840 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CACNA1FO60840 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.43
CACNA1FO60840 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC30.2■■■□□ 2.43
CACNA1FO60840 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CACNA1FO60840 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
CACNA1FO60840 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.42
CACNA1FO60840 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.42
CACNA1FO60840 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CACNA1FO60840 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC30.19■■■□□ 2.42
CACNA1FO60840 KRT8P33-201ENST00000508125 1423 ntBASIC30.19■■■□□ 2.42
CACNA1FO60840 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CACNA1FO60840 AL592295.1-201ENST00000400984 884 ntBASIC30.19■■■□□ 2.42
CACNA1FO60840 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
CACNA1FO60840 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
CACNA1FO60840 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CACNA1FO60840 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
CACNA1FO60840 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC30.17■■■□□ 2.42
CACNA1FO60840 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC30.17■■■□□ 2.42
CACNA1FO60840 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
CACNA1FO60840 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CACNA1FO60840 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
CACNA1FO60840 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC30.17■■■□□ 2.42
CACNA1FO60840 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC30.17■■■□□ 2.42
CACNA1FO60840 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CACNA1FO60840 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CACNA1FO60840 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC30.16■■■□□ 2.42
CACNA1FO60840 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC30.16■■■□□ 2.42
CACNA1FO60840 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CACNA1FO60840 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
CACNA1FO60840 KRT18P24-201ENST00000344739 1156 ntBASIC30.15■■■□□ 2.42
CACNA1FO60840 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CACNA1FO60840 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
CACNA1FO60840 FOXO3B-201ENST00000395675 1928 ntBASIC30.15■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms