Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV3A0A0B4J244 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV3A0A0B4J244 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV3A0A0B4J244 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV3A0A0B4J244 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.08■□□□□ 0.65
TRAV3A0A0B4J244 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV3A0A0B4J244 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV3A0A0B4J244 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.08■□□□□ 0.65
TRAV3A0A0B4J244 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV3A0A0B4J244 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TRAV3A0A0B4J244 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.08■□□□□ 0.64
TRAV3A0A0B4J244 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV3A0A0B4J244 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TRAV3A0A0B4J244 AP003733.4-201ENST00000623785 1697 ntBASIC19.08■□□□□ 0.64
TRAV3A0A0B4J244 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
TRAV3A0A0B4J244 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
TRAV3A0A0B4J244 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.06■□□□□ 0.64
TRAV3A0A0B4J244 AC022413.1-201ENST00000624602 984 ntBASIC19.06■□□□□ 0.64
TRAV3A0A0B4J244 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.06■□□□□ 0.64
TRAV3A0A0B4J244 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
TRAV3A0A0B4J244 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.06■□□□□ 0.64
TRAV3A0A0B4J244 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV3A0A0B4J244 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV3A0A0B4J244 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.05■□□□□ 0.64
TRAV3A0A0B4J244 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
TRAV3A0A0B4J244 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV3A0A0B4J244 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.04■□□□□ 0.64
TRAV3A0A0B4J244 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.04■□□□□ 0.64
TRAV3A0A0B4J244 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV3A0A0B4J244 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV3A0A0B4J244 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 ECEL1P2-201ENST00000461596 1295 ntBASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV3A0A0B4J244 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV3A0A0B4J244 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV3A0A0B4J244 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.02■□□□□ 0.64
TRAV3A0A0B4J244 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.02■□□□□ 0.64
TRAV3A0A0B4J244 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV3A0A0B4J244 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRAV3A0A0B4J244 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRAV3A0A0B4J244 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRAV3A0A0B4J244 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRAV3A0A0B4J244 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.01■□□□□ 0.63
TRAV3A0A0B4J244 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV3A0A0B4J244 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV3A0A0B4J244 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV3A0A0B4J244 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.01■□□□□ 0.63
TRAV3A0A0B4J244 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
TRAV3A0A0B4J244 RP9P-202ENST00000450133 1212 ntBASIC19.01■□□□□ 0.63
TRAV3A0A0B4J244 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
TRAV3A0A0B4J244 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 AC093536.1-201ENST00000569153 554 ntBASIC19■□□□□ 0.63
TRAV3A0A0B4J244 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV3A0A0B4J244 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV3A0A0B4J244 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV3A0A0B4J244 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.99■□□□□ 0.63
TRAV3A0A0B4J244 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV3A0A0B4J244 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV3A0A0B4J244 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV3A0A0B4J244 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms