Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLCF1Q9UBD9 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLCF1Q9UBD9 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLCF1Q9UBD9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLCF1Q9UBD9 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLCF1Q9UBD9 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLCF1Q9UBD9 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 AC073592.8-201ENST00000624126 511 ntBASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 PCGF3-213ENST00000620529 1899 ntBASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 RNF216P1-203ENST00000404404 2427 ntBASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 AL035456.1-201ENST00000456064 1369 ntBASIC14.6□□□□□ -0.07
CLCF1Q9UBD9 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 LINC02084-201ENST00000606069 1096 ntBASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 AL589702.1-201ENST00000641229 1509 ntBASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.59□□□□□ -0.07
CLCF1Q9UBD9 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLCF1Q9UBD9 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CLCF1Q9UBD9 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLCF1Q9UBD9 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLCF1Q9UBD9 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
CLCF1Q9UBD9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
CLCF1Q9UBD9 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLCF1Q9UBD9 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.58□□□□□ -0.08
CLCF1Q9UBD9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLCF1Q9UBD9 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CLCF1Q9UBD9 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.58□□□□□ -0.08
CLCF1Q9UBD9 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms