Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
ERCC4Q92889 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
ERCC4Q92889 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.73■□□□□ 0.59
ERCC4Q92889 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.73■□□□□ 0.59
ERCC4Q92889 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.73■□□□□ 0.59
ERCC4Q92889 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
ERCC4Q92889 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
ERCC4Q92889 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.72■□□□□ 0.59
ERCC4Q92889 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.72■□□□□ 0.59
ERCC4Q92889 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.72■□□□□ 0.59
ERCC4Q92889 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
ERCC4Q92889 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
ERCC4Q92889 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
ERCC4Q92889 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.72■□□□□ 0.59
ERCC4Q92889 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.72■□□□□ 0.59
ERCC4Q92889 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.72■□□□□ 0.59
ERCC4Q92889 CYP2A7P1-201ENST00000595391 815 ntBASIC18.72■□□□□ 0.59
ERCC4Q92889 AL121772.3-201ENST00000610840 674 ntBASIC18.72■□□□□ 0.59
ERCC4Q92889 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.72■□□□□ 0.59
ERCC4Q92889 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.72■□□□□ 0.59
ERCC4Q92889 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
ERCC4Q92889 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
ERCC4Q92889 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.72■□□□□ 0.59
ERCC4Q92889 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
ERCC4Q92889 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.72■□□□□ 0.59
ERCC4Q92889 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
ERCC4Q92889 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ERCC4Q92889 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
ERCC4Q92889 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
ERCC4Q92889 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
ERCC4Q92889 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 FLJ16779-201ENST00000612722 7638 ntBASIC18.71■□□□□ 0.59
ERCC4Q92889 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
ERCC4Q92889 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
ERCC4Q92889 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.71■□□□□ 0.59
ERCC4Q92889 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
ERCC4Q92889 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.71■□□□□ 0.59
ERCC4Q92889 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.71■□□□□ 0.59
ERCC4Q92889 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.71■□□□□ 0.59
ERCC4Q92889 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.71■□□□□ 0.59
ERCC4Q92889 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.71■□□□□ 0.59
ERCC4Q92889 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.71■□□□□ 0.59
ERCC4Q92889 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.71■□□□□ 0.59
ERCC4Q92889 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.71■□□□□ 0.59
ERCC4Q92889 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.71■□□□□ 0.59
ERCC4Q92889 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.71■□□□□ 0.59
ERCC4Q92889 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.71■□□□□ 0.59
ERCC4Q92889 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
ERCC4Q92889 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
ERCC4Q92889 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
ERCC4Q92889 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
ERCC4Q92889 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ERCC4Q92889 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
ERCC4Q92889 GPAA1P2-202ENST00000606848 1787 ntBASIC18.7■□□□□ 0.58
ERCC4Q92889 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms