Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 AC010491.1-201ENST00000563101 2797 ntBASIC12.62□□□□□ -0.39
HLA-DMBP28068 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 SLC22A20-204ENST00000530038 1673 ntBASIC12.62□□□□□ -0.39
HLA-DMBP28068 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 AL031284.1-201ENST00000419297 478 ntBASIC12.62□□□□□ -0.39
HLA-DMBP28068 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 AC093909.1-201ENST00000504731 1122 ntBASIC12.62□□□□□ -0.39
HLA-DMBP28068 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 ING5-213ENST00000636051 4199 ntTSL 5 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 AC131009.4-201ENST00000624048 1740 ntBASIC12.62□□□□□ -0.39
HLA-DMBP28068 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 AL596257.1-201ENST00000641463 2694 ntBASIC12.61□□□□□ -0.39
HLA-DMBP28068 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC12.61□□□□□ -0.39
HLA-DMBP28068 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 PPIE-208ENST00000470213 927 ntTSL 3 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 ARTN-206ENST00000472435 402 ntTSL 3 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 RNPS1P1-201ENST00000507437 918 ntBASIC12.61□□□□□ -0.39
HLA-DMBP28068 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 KRT8P39-201ENST00000396270 1433 ntBASIC12.61□□□□□ -0.39
HLA-DMBP28068 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DMBP28068 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DMBP28068 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms