Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.64□□□□□ -0.07
MMP28Q9H239 TSPY22P-201ENST00000427496 604 ntBASIC14.64□□□□□ -0.07
MMP28Q9H239 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC14.64□□□□□ -0.07
MMP28Q9H239 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
MMP28Q9H239 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.64□□□□□ -0.07
MMP28Q9H239 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.64□□□□□ -0.07
MMP28Q9H239 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.64□□□□□ -0.07
MMP28Q9H239 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC14.64□□□□□ -0.07
MMP28Q9H239 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
MMP28Q9H239 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.64□□□□□ -0.07
MMP28Q9H239 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.64□□□□□ -0.07
MMP28Q9H239 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC14.64□□□□□ -0.07
MMP28Q9H239 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.64□□□□□ -0.07
MMP28Q9H239 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
MMP28Q9H239 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 AMT-250ENST00000637682 1823 ntTSL 5 BASIC14.64□□□□□ -0.07
MMP28Q9H239 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC14.63□□□□□ -0.07
MMP28Q9H239 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC14.63□□□□□ -0.07
MMP28Q9H239 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.63□□□□□ -0.07
MMP28Q9H239 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
MMP28Q9H239 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.63□□□□□ -0.07
MMP28Q9H239 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
MMP28Q9H239 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
MMP28Q9H239 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 CICP24-201ENST00000605464 2705 ntBASIC14.63□□□□□ -0.07
MMP28Q9H239 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.63□□□□□ -0.07
MMP28Q9H239 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
MMP28Q9H239 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC14.63□□□□□ -0.07
MMP28Q9H239 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.63□□□□□ -0.07
MMP28Q9H239 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
MMP28Q9H239 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.63□□□□□ -0.07
MMP28Q9H239 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MMP28Q9H239 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
MMP28Q9H239 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
MMP28Q9H239 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.62□□□□□ -0.07
MMP28Q9H239 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
MMP28Q9H239 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
MMP28Q9H239 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
MMP28Q9H239 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
MMP28Q9H239 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC14.62□□□□□ -0.07
MMP28Q9H239 DUSP5P1-201ENST00000441325 1139 ntBASIC14.62□□□□□ -0.07
MMP28Q9H239 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.62□□□□□ -0.07
MMP28Q9H239 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.62□□□□□ -0.07
MMP28Q9H239 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.62□□□□□ -0.07
MMP28Q9H239 GUSBP12-201ENST00000513727 720 ntBASIC14.62□□□□□ -0.07
MMP28Q9H239 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC14.62□□□□□ -0.07
MMP28Q9H239 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC14.62□□□□□ -0.07
MMP28Q9H239 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC14.62□□□□□ -0.07
MMP28Q9H239 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.62□□□□□ -0.07
MMP28Q9H239 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
MMP28Q9H239 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
MMP28Q9H239 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.62□□□□□ -0.07
MMP28Q9H239 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms