Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SOX3P41225 AC068418.2-201ENST00000577309 3703 ntBASIC15.57■□□□□ 0.08
SOX3P41225 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.57■□□□□ 0.08
SOX3P41225 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.57■□□□□ 0.08
SOX3P41225 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.57■□□□□ 0.08
SOX3P41225 AC005829.1-201ENST00000570002 483 ntBASIC15.57■□□□□ 0.08
SOX3P41225 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.57■□□□□ 0.08
SOX3P41225 AC068137.2-201ENST00000605408 478 ntBASIC15.57■□□□□ 0.08
SOX3P41225 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 C20orf181-201ENST00000623918 480 ntBASIC15.57■□□□□ 0.08
SOX3P41225 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 TOP3BP1-201ENST00000420768 1380 ntBASIC15.57■□□□□ 0.08
SOX3P41225 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SOX3P41225 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
SOX3P41225 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.56■□□□□ 0.08
SOX3P41225 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 AC124947.2-201ENST00000547118 1133 ntBASIC15.56■□□□□ 0.08
SOX3P41225 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.56■□□□□ 0.08
SOX3P41225 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.56■□□□□ 0.08
SOX3P41225 AL691403.2-201ENST00000618460 490 ntBASIC15.56■□□□□ 0.08
SOX3P41225 AL645728.2-201ENST00000641974 660 ntBASIC15.56■□□□□ 0.08
SOX3P41225 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 AL021920.2-201ENST00000624828 1351 ntBASIC15.56■□□□□ 0.08
SOX3P41225 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.56■□□□□ 0.08
SOX3P41225 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.56■□□□□ 0.08
SOX3P41225 AC092919.2-201ENST00000623631 1645 ntBASIC15.56■□□□□ 0.08
SOX3P41225 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.56■□□□□ 0.08
SOX3P41225 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 TSPY26P-202ENST00000565928 3884 ntBASIC15.56■□□□□ 0.08
SOX3P41225 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SOX3P41225 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX3P41225 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms