Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.85■□□□□ 0.13
SEMA3DO95025 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
SEMA3DO95025 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.85■□□□□ 0.13
SEMA3DO95025 AC034105.1-201ENST00000563488 319 ntBASIC15.85■□□□□ 0.13
SEMA3DO95025 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.85■□□□□ 0.13
SEMA3DO95025 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SEMA3DO95025 AC007064.4-201ENST00000637740 555 ntBASIC15.85■□□□□ 0.13
SEMA3DO95025 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.85■□□□□ 0.13
SEMA3DO95025 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SEMA3DO95025 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.85■□□□□ 0.13
SEMA3DO95025 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
SEMA3DO95025 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 AC104109.2-201ENST00000602919 1418 ntBASIC15.85■□□□□ 0.13
SEMA3DO95025 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SEMA3DO95025 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.85■□□□□ 0.13
SEMA3DO95025 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SEMA3DO95025 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
SEMA3DO95025 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SEMA3DO95025 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SEMA3DO95025 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SEMA3DO95025 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.84■□□□□ 0.13
SEMA3DO95025 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.84■□□□□ 0.13
SEMA3DO95025 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.84■□□□□ 0.13
SEMA3DO95025 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.84■□□□□ 0.13
SEMA3DO95025 AC023141.13-201ENST00000604991 943 ntBASIC15.84■□□□□ 0.13
SEMA3DO95025 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.84■□□□□ 0.13
SEMA3DO95025 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.84■□□□□ 0.13
SEMA3DO95025 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
SEMA3DO95025 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
SEMA3DO95025 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
SEMA3DO95025 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SEMA3DO95025 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.84■□□□□ 0.13
SEMA3DO95025 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.84■□□□□ 0.13
SEMA3DO95025 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SEMA3DO95025 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.83■□□□□ 0.13
SEMA3DO95025 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.83■□□□□ 0.13
SEMA3DO95025 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SEMA3DO95025 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
SEMA3DO95025 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.83■□□□□ 0.13
SEMA3DO95025 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SEMA3DO95025 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SEMA3DO95025 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.83■□□□□ 0.13
SEMA3DO95025 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SEMA3DO95025 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
SEMA3DO95025 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SEMA3DO95025 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.83■□□□□ 0.12
SEMA3DO95025 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
SEMA3DO95025 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SEMA3DO95025 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SEMA3DO95025 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SEMA3DO95025 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SEMA3DO95025 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.83■□□□□ 0.12
SEMA3DO95025 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SEMA3DO95025 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.83■□□□□ 0.12
SEMA3DO95025 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.83■□□□□ 0.12
SEMA3DO95025 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SEMA3DO95025 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.83■□□□□ 0.12
SEMA3DO95025 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.83■□□□□ 0.12
SEMA3DO95025 AC109635.5-201ENST00000533593 962 ntBASIC15.83■□□□□ 0.12
SEMA3DO95025 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.83■□□□□ 0.12
SEMA3DO95025 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms