Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.46■□□□□ 0.23
VPS9D1Q9Y2B5 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.46■□□□□ 0.22
VPS9D1Q9Y2B5 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
VPS9D1Q9Y2B5 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
VPS9D1Q9Y2B5 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.46■□□□□ 0.22
VPS9D1Q9Y2B5 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 AC104109.2-201ENST00000602919 1418 ntBASIC16.45■□□□□ 0.22
VPS9D1Q9Y2B5 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 PSAT1P2-201ENST00000426107 972 ntBASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms