Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 ZNF259P1-201ENST00000407656 1365 ntBASIC17.08■□□□□ 0.32
PCDH9Q9HC56 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 AC005412.3-201ENST00000580309 715 ntBASIC17.08■□□□□ 0.32
PCDH9Q9HC56 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 AP001350.2-201ENST00000625104 1094 ntBASIC17.08■□□□□ 0.32
PCDH9Q9HC56 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PCDH9Q9HC56 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 HCG4-201ENST00000418983 998 ntBASIC17.07■□□□□ 0.32
PCDH9Q9HC56 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 AC106730.1-201ENST00000566722 1090 ntBASIC17.07■□□□□ 0.32
PCDH9Q9HC56 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDH9Q9HC56 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.06■□□□□ 0.32
PCDH9Q9HC56 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.06■□□□□ 0.32
PCDH9Q9HC56 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 PAUPAR-201ENST00000630360 2965 ntBASIC17.06■□□□□ 0.32
PCDH9Q9HC56 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms