Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.92■□□□□ 0.3
TRIM56Q9BRZ2 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 HYMAI-201ENST00000635591 3347 ntBASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 AC073621.1-201ENST00000392730 636 ntBASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 HNRNPDP1-201ENST00000439535 754 ntBASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 AC107918.4-202ENST00000641623 219 ntBASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
TRIM56Q9BRZ2 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 KRT18P27-201ENST00000427733 1299 ntBASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 EMBP1-201ENST00000458200 901 ntBASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 SCARNA2-201ENST00000458748 420 ntBASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 AC012640.2-201ENST00000561606 901 ntBASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 AL805961.1-202ENST00000641562 540 ntBASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TRIM56Q9BRZ2 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.3
TRIM56Q9BRZ2 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.3
TRIM56Q9BRZ2 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 LAGE3P1-201ENST00000425356 484 ntBASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms