Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AL096865.1-201ENST00000606796 927 ntBASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AC063926.2-201ENST00000623766 1308 ntBASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 AC254562.1-201ENST00000417586 456 ntBASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 BCRP1-201ENST00000444246 691 ntBASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 FGFR3P6-201ENST00000457012 610 ntBASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 AC092910.1-201ENST00000482027 1129 ntBASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 RBM7-207ENST00000544582 692 ntTSL 3 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 AC190387.1-201ENST00000551683 408 ntBASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 AC026691.1-201ENST00000602502 2017 ntBASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
PDLIM3Q53GG5 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 CD9-202ENST00000382515 1229 ntTSL 5 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 DANCR-204ENST00000444958 709 ntTSL 3 BASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 RNA5SP415-201ENST00000517246 115 ntBASIC13.78□□□□□ -0.2
PDLIM3Q53GG5 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms