Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBFD1O14562 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
UBFD1O14562 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
UBFD1O14562 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
UBFD1O14562 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBFD1O14562 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.04■□□□□ 0.16
UBFD1O14562 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBFD1O14562 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
UBFD1O14562 AL592424.1-201ENST00000563624 1536 ntBASIC16.04■□□□□ 0.16
UBFD1O14562 AC012569.1-201ENST00000591191 1524 ntBASIC16.04■□□□□ 0.16
UBFD1O14562 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.03■□□□□ 0.16
UBFD1O14562 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.03■□□□□ 0.16
UBFD1O14562 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.03■□□□□ 0.16
UBFD1O14562 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
UBFD1O14562 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.03■□□□□ 0.16
UBFD1O14562 KRT18P56-201ENST00000507275 550 ntBASIC16.03■□□□□ 0.16
UBFD1O14562 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.03■□□□□ 0.16
UBFD1O14562 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.03■□□□□ 0.16
UBFD1O14562 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.03■□□□□ 0.16
UBFD1O14562 AC105339.3-201ENST00000560043 636 ntBASIC16.03■□□□□ 0.16
UBFD1O14562 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.03■□□□□ 0.16
UBFD1O14562 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.03■□□□□ 0.16
UBFD1O14562 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 AC004790.2-201ENST00000623588 572 ntBASIC16.03■□□□□ 0.16
UBFD1O14562 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
UBFD1O14562 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.03■□□□□ 0.16
UBFD1O14562 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
UBFD1O14562 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
UBFD1O14562 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBFD1O14562 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.02■□□□□ 0.16
UBFD1O14562 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
UBFD1O14562 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.02■□□□□ 0.16
UBFD1O14562 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
UBFD1O14562 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
UBFD1O14562 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.02■□□□□ 0.16
UBFD1O14562 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.02■□□□□ 0.16
UBFD1O14562 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.02■□□□□ 0.16
UBFD1O14562 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
UBFD1O14562 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.02■□□□□ 0.16
UBFD1O14562 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.02■□□□□ 0.16
UBFD1O14562 AC108073.2-201ENST00000464002 357 ntBASIC16.02■□□□□ 0.16
UBFD1O14562 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
UBFD1O14562 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.02■□□□□ 0.16
UBFD1O14562 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.02■□□□□ 0.16
UBFD1O14562 AC104640.1-201ENST00000562617 2109 ntBASIC16.02■□□□□ 0.16
UBFD1O14562 AC148477.8-201ENST00000624298 468 ntBASIC16.02■□□□□ 0.16
UBFD1O14562 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBFD1O14562 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.02■□□□□ 0.16
UBFD1O14562 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.02■□□□□ 0.16
UBFD1O14562 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.02■□□□□ 0.15
UBFD1O14562 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
UBFD1O14562 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.02■□□□□ 0.15
UBFD1O14562 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
UBFD1O14562 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.02■□□□□ 0.15
UBFD1O14562 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.02■□□□□ 0.15
UBFD1O14562 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms