Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TMX2-CTNND1H3BSU7 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 PMS2P4-201ENST00000412466 1052 ntBASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 AC079140.1-201ENST00000508039 487 ntBASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 KRT8P48-201ENST00000515599 1220 ntBASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 IGHV3-62-201ENST00000520057 340 ntBASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 AP001059.3-201ENST00000619053 235 ntBASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 AJ011932.1-201ENST00000621707 465 ntBASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TMX2-CTNND1H3BSU7 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TMX2-CTNND1H3BSU7 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL035633.1-201ENST00000406139 838 ntBASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC107918.2-201ENST00000530817 355 ntBASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL662844.4-201ENST00000606367 2838 ntBASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.26■□□□□ 0.19
TMX2-CTNND1H3BSU7 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC092171.3-201ENST00000610122 2651 ntBASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC012569.1-201ENST00000591191 1524 ntBASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms