Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 PCGF3-213ENST00000620529 1899 ntBASIC18.35■□□□□ 0.53
VTA1Q9NP79 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 AC004790.1-201ENST00000612686 536 ntBASIC18.35■□□□□ 0.53
VTA1Q9NP79 MIR6069-201ENST00000620069 79 ntBASIC18.35■□□□□ 0.53
VTA1Q9NP79 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VTA1Q9NP79 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VTA1Q9NP79 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 SPDYE18-201ENST00000510091 1050 ntBASIC18.34■□□□□ 0.53
VTA1Q9NP79 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VTA1Q9NP79 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VTA1Q9NP79 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VTA1Q9NP79 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
VTA1Q9NP79 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VTA1Q9NP79 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.53
VTA1Q9NP79 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
VTA1Q9NP79 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VTA1Q9NP79 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.33■□□□□ 0.53
VTA1Q9NP79 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.33■□□□□ 0.53
VTA1Q9NP79 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
VTA1Q9NP79 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VTA1Q9NP79 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
VTA1Q9NP79 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VTA1Q9NP79 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VTA1Q9NP79 DGCR5-201ENST00000399539 862 ntBASIC18.33■□□□□ 0.52
VTA1Q9NP79 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VTA1Q9NP79 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.33■□□□□ 0.52
VTA1Q9NP79 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms