Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF1Q92994 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.47■□□□□ 0.71
BRF1Q92994 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BRF1Q92994 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.47■□□□□ 0.71
BRF1Q92994 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF1Q92994 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF1Q92994 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
BRF1Q92994 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.47■□□□□ 0.71
BRF1Q92994 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
BRF1Q92994 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
BRF1Q92994 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
BRF1Q92994 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 AC140658.5-201ENST00000438532 169 ntBASIC19.46■□□□□ 0.71
BRF1Q92994 KRT18P3-201ENST00000451602 1288 ntBASIC19.46■□□□□ 0.71
BRF1Q92994 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.46■□□□□ 0.71
BRF1Q92994 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.46■□□□□ 0.71
BRF1Q92994 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
BRF1Q92994 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
BRF1Q92994 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.46■□□□□ 0.71
BRF1Q92994 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.46■□□□□ 0.71
BRF1Q92994 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.46■□□□□ 0.71
BRF1Q92994 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.46■□□□□ 0.71
BRF1Q92994 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF1Q92994 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.46■□□□□ 0.71
BRF1Q92994 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 REXO1L8P-201ENST00000604378 1897 ntBASIC19.45■□□□□ 0.7
BRF1Q92994 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
BRF1Q92994 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.45■□□□□ 0.7
BRF1Q92994 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
BRF1Q92994 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.45■□□□□ 0.7
BRF1Q92994 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.45■□□□□ 0.7
BRF1Q92994 AL591424.1-201ENST00000442569 1213 ntBASIC19.45■□□□□ 0.7
BRF1Q92994 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
BRF1Q92994 RNA5SP416-201ENST00000516838 111 ntBASIC19.45■□□□□ 0.7
BRF1Q92994 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.45■□□□□ 0.7
BRF1Q92994 AC109635.5-201ENST00000533593 962 ntBASIC19.45■□□□□ 0.7
BRF1Q92994 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.45■□□□□ 0.7
BRF1Q92994 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.45■□□□□ 0.7
BRF1Q92994 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.45■□□□□ 0.7
BRF1Q92994 FAM197Y3-203ENST00000618346 717 ntBASIC19.45■□□□□ 0.7
BRF1Q92994 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 AL513523.2-202ENST00000427283 2040 ntBASIC19.45■□□□□ 0.7
BRF1Q92994 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.45■□□□□ 0.7
BRF1Q92994 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
BRF1Q92994 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
BRF1Q92994 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF1Q92994 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.44■□□□□ 0.7
BRF1Q92994 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.44■□□□□ 0.7
BRF1Q92994 POU5F1P6-201ENST00000466990 990 ntBASIC19.44■□□□□ 0.7
BRF1Q92994 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.44■□□□□ 0.7
BRF1Q92994 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 PDPK2P-202ENST00000562415 1191 ntBASIC19.44■□□□□ 0.7
BRF1Q92994 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms