Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC16.87■□□□□ 0.29
COL9A1P20849 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.87■□□□□ 0.29
COL9A1P20849 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.87■□□□□ 0.29
COL9A1P20849 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
COL9A1P20849 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.87■□□□□ 0.29
COL9A1P20849 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
COL9A1P20849 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.87■□□□□ 0.29
COL9A1P20849 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.87■□□□□ 0.29
COL9A1P20849 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.87■□□□□ 0.29
COL9A1P20849 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
COL9A1P20849 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.86■□□□□ 0.29
COL9A1P20849 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.86■□□□□ 0.29
COL9A1P20849 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.86■□□□□ 0.29
COL9A1P20849 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 LINC00895-201ENST00000629028 1637 ntBASIC16.86■□□□□ 0.29
COL9A1P20849 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.86■□□□□ 0.29
COL9A1P20849 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.86■□□□□ 0.29
COL9A1P20849 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.86■□□□□ 0.29
COL9A1P20849 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.86■□□□□ 0.29
COL9A1P20849 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.86■□□□□ 0.29
COL9A1P20849 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.86■□□□□ 0.29
COL9A1P20849 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC16.86■□□□□ 0.29
COL9A1P20849 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.86■□□□□ 0.29
COL9A1P20849 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.86■□□□□ 0.29
COL9A1P20849 LINC00226-202ENST00000618204 1052 ntTSL 2 BASIC16.86■□□□□ 0.29
COL9A1P20849 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
COL9A1P20849 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
COL9A1P20849 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.86■□□□□ 0.29
COL9A1P20849 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.86■□□□□ 0.29
COL9A1P20849 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.86■□□□□ 0.29
COL9A1P20849 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.86■□□□□ 0.29
COL9A1P20849 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.86■□□□□ 0.29
COL9A1P20849 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL9A1P20849 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
COL9A1P20849 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.85■□□□□ 0.29
COL9A1P20849 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.85■□□□□ 0.29
COL9A1P20849 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL9A1P20849 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
COL9A1P20849 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.85■□□□□ 0.29
COL9A1P20849 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
COL9A1P20849 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.85■□□□□ 0.29
COL9A1P20849 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.85■□□□□ 0.29
COL9A1P20849 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.85■□□□□ 0.29
COL9A1P20849 RPL7P3-201ENST00000441388 714 ntBASIC16.85■□□□□ 0.29
COL9A1P20849 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.85■□□□□ 0.29
COL9A1P20849 HMGB3P14-201ENST00000494195 599 ntBASIC16.85■□□□□ 0.29
COL9A1P20849 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.85■□□□□ 0.29
COL9A1P20849 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.85■□□□□ 0.29
COL9A1P20849 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC16.85■□□□□ 0.29
COL9A1P20849 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.85■□□□□ 0.29
COL9A1P20849 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
COL9A1P20849 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16.85■□□□□ 0.29
COL9A1P20849 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.85■□□□□ 0.29
COL9A1P20849 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.85■□□□□ 0.29
COL9A1P20849 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.85■□□□□ 0.29
COL9A1P20849 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
COL9A1P20849 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms