Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 AC040169.1-201ENST00000565382 521 ntBASIC16.15■□□□□ 0.18
YBX1P67809 AC007064.4-201ENST00000637740 555 ntBASIC16.15■□□□□ 0.18
YBX1P67809 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
YBX1P67809 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
YBX1P67809 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
YBX1P67809 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.14■□□□□ 0.17
YBX1P67809 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
YBX1P67809 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.14■□□□□ 0.17
YBX1P67809 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 AL512652.2-201ENST00000625156 1716 ntBASIC16.14■□□□□ 0.17
YBX1P67809 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
YBX1P67809 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
YBX1P67809 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
YBX1P67809 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.14■□□□□ 0.17
YBX1P67809 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 YBX2P1-201ENST00000394192 760 ntBASIC16.14■□□□□ 0.17
YBX1P67809 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.14■□□□□ 0.17
YBX1P67809 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
YBX1P67809 AC074386.1-202ENST00000463561 864 ntBASIC16.14■□□□□ 0.17
YBX1P67809 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
YBX1P67809 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.14■□□□□ 0.17
YBX1P67809 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.14■□□□□ 0.17
YBX1P67809 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.14■□□□□ 0.17
YBX1P67809 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
YBX1P67809 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
YBX1P67809 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
YBX1P67809 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.13■□□□□ 0.17
YBX1P67809 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.13■□□□□ 0.17
YBX1P67809 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
YBX1P67809 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
YBX1P67809 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
YBX1P67809 ME2P1-201ENST00000426028 1970 ntBASIC16.13■□□□□ 0.17
YBX1P67809 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
YBX1P67809 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
YBX1P67809 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.13■□□□□ 0.17
YBX1P67809 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.13■□□□□ 0.17
YBX1P67809 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.13■□□□□ 0.17
YBX1P67809 AL031432.2-201ENST00000566714 459 ntBASIC16.13■□□□□ 0.17
YBX1P67809 AL928711.1-201ENST00000570165 459 ntBASIC16.13■□□□□ 0.17
YBX1P67809 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.13■□□□□ 0.17
YBX1P67809 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
YBX1P67809 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.13■□□□□ 0.17
YBX1P67809 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
YBX1P67809 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms