Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CD99P1-205ENST00000527459 561 ntBASIC12.51□□□□□ -0.41
FOXA3P55318 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC12.51□□□□□ -0.41
FOXA3P55318 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC12.51□□□□□ -0.41
FOXA3P55318 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.51□□□□□ -0.41
FOXA3P55318 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.51□□□□□ -0.41
FOXA3P55318 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 AC006449.6-201ENST00000612330 2296 ntBASIC12.51□□□□□ -0.41
FOXA3P55318 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
FOXA3P55318 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 AL353593.2-201ENST00000602529 1483 ntBASIC12.51□□□□□ -0.41
FOXA3P55318 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC12.51□□□□□ -0.41
FOXA3P55318 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
FOXA3P55318 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC12.5□□□□□ -0.41
FOXA3P55318 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC12.5□□□□□ -0.41
FOXA3P55318 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
FOXA3P55318 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 AC142381.4-202ENST00000563973 229 ntBASIC12.5□□□□□ -0.41
FOXA3P55318 GPX4-207ENST00000589115 812 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC12.5□□□□□ -0.41
FOXA3P55318 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 LITAF-220ENST00000620789 692 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 VPS72-207ENST00000640458 689 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 GGT3P-204ENST00000453783 1664 ntBASIC12.5□□□□□ -0.41
FOXA3P55318 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA3P55318 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.5□□□□□ -0.41
FOXA3P55318 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
FOXA3P55318 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA3P55318 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
FOXA3P55318 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms