Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
UPK1AO00322 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
UPK1AO00322 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
UPK1AO00322 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
UPK1AO00322 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
UPK1AO00322 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
UPK1AO00322 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
UPK1AO00322 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
UPK1AO00322 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
UPK1AO00322 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.74■□□□□ 0.11
UPK1AO00322 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
UPK1AO00322 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
UPK1AO00322 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
UPK1AO00322 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.73■□□□□ 0.11
UPK1AO00322 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.73■□□□□ 0.11
UPK1AO00322 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.73■□□□□ 0.11
UPK1AO00322 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.73■□□□□ 0.11
UPK1AO00322 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.73■□□□□ 0.11
UPK1AO00322 MRPL20P1-201ENST00000400819 433 ntBASIC15.73■□□□□ 0.11
UPK1AO00322 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
UPK1AO00322 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.73■□□□□ 0.11
UPK1AO00322 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 AC098831.1-202ENST00000438821 336 ntBASIC15.73■□□□□ 0.11
UPK1AO00322 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.73■□□□□ 0.11
UPK1AO00322 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.73■□□□□ 0.11
UPK1AO00322 OR7E47P-204ENST00000575924 449 ntBASIC15.73■□□□□ 0.11
UPK1AO00322 AC091167.2-201ENST00000579581 588 ntBASIC15.73■□□□□ 0.11
UPK1AO00322 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.73■□□□□ 0.11
UPK1AO00322 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.73■□□□□ 0.11
UPK1AO00322 AL139011.1-202ENST00000642063 584 ntBASIC15.73■□□□□ 0.11
UPK1AO00322 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 DBET-201ENST00000630918 3363 ntBASIC15.73■□□□□ 0.11
UPK1AO00322 SLC22A20-204ENST00000530038 1673 ntBASIC15.73■□□□□ 0.11
UPK1AO00322 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.73■□□□□ 0.11
UPK1AO00322 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UPK1AO00322 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.73■□□□□ 0.11
UPK1AO00322 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
UPK1AO00322 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.72■□□□□ 0.11
UPK1AO00322 HLA-A-201ENST00000376802 1334 ntBASIC15.72■□□□□ 0.11
UPK1AO00322 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.72■□□□□ 0.11
UPK1AO00322 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.72■□□□□ 0.11
UPK1AO00322 AC131009.4-201ENST00000624048 1740 ntBASIC15.72■□□□□ 0.11
UPK1AO00322 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.72■□□□□ 0.11
UPK1AO00322 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.72■□□□□ 0.11
UPK1AO00322 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
UPK1AO00322 PMS2P1-201ENST00000431037 1228 ntBASIC15.72■□□□□ 0.11
UPK1AO00322 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.72■□□□□ 0.11
UPK1AO00322 AC093909.1-201ENST00000504731 1122 ntBASIC15.72■□□□□ 0.11
UPK1AO00322 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.72■□□□□ 0.11
UPK1AO00322 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.72■□□□□ 0.11
UPK1AO00322 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.72■□□□□ 0.11
UPK1AO00322 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.72■□□□□ 0.11
UPK1AO00322 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
UPK1AO00322 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
UPK1AO00322 SNX33P1-201ENST00000592116 1762 ntBASIC15.72■□□□□ 0.11
UPK1AO00322 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.72■□□□□ 0.11
UPK1AO00322 AL353732.1-201ENST00000569618 1459 ntBASIC15.71■□□□□ 0.11
UPK1AO00322 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.71■□□□□ 0.11
UPK1AO00322 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
UPK1AO00322 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.71■□□□□ 0.11
UPK1AO00322 OR6D1P-203ENST00000641209 4860 ntBASIC15.71■□□□□ 0.11
UPK1AO00322 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
UPK1AO00322 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms