Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 AC020765.3-201ENST00000613051 740 ntBASIC16.66■□□□□ 0.26
DKK3Q9UBP4 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
DKK3Q9UBP4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 AL139400.1-201ENST00000366220 510 ntBASIC16.65■□□□□ 0.26
DKK3Q9UBP4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 KRT18P32-201ENST00000424695 1287 ntBASIC16.65■□□□□ 0.26
DKK3Q9UBP4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 METTL21AP1-201ENST00000438852 635 ntBASIC16.65■□□□□ 0.26
DKK3Q9UBP4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 AP000842.3-202ENST00000569238 1080 ntBASIC16.65■□□□□ 0.26
DKK3Q9UBP4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
DKK3Q9UBP4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.26
DKK3Q9UBP4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
DKK3Q9UBP4 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
DKK3Q9UBP4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.64■□□□□ 0.26
DKK3Q9UBP4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
DKK3Q9UBP4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
DKK3Q9UBP4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 AC105233.2-201ENST00000523697 349 ntBASIC16.64■□□□□ 0.25
DKK3Q9UBP4 AF228730.5-201ENST00000530288 346 ntBASIC16.64■□□□□ 0.25
DKK3Q9UBP4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 AL138918.1-201ENST00000568306 659 ntBASIC16.64■□□□□ 0.25
DKK3Q9UBP4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.64■□□□□ 0.25
DKK3Q9UBP4 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms