Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RPRD1AQ96P16 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.08■□□□□ 0.33
RPRD1AQ96P16 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.08■□□□□ 0.33
RPRD1AQ96P16 GPAA1P2-202ENST00000606848 1787 ntBASIC17.08■□□□□ 0.33
RPRD1AQ96P16 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 AL592309.1-201ENST00000443127 649 ntBASIC17.08■□□□□ 0.32
RPRD1AQ96P16 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 IGHV3-62-201ENST00000520057 340 ntBASIC17.08■□□□□ 0.32
RPRD1AQ96P16 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 NKILA-202ENST00000614771 2598 ntBASIC17.08■□□□□ 0.32
RPRD1AQ96P16 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 AGGF1P2-201ENST00000426656 2106 ntBASIC17.08■□□□□ 0.32
RPRD1AQ96P16 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPRD1AQ96P16 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 GGT4P-201ENST00000623672 1708 ntBASIC17.07■□□□□ 0.32
RPRD1AQ96P16 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 AC092171.3-201ENST00000610122 2651 ntBASIC17.07■□□□□ 0.32
RPRD1AQ96P16 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 AC005237.2-201ENST00000434368 219 ntBASIC17.07■□□□□ 0.32
RPRD1AQ96P16 SPCS2P4-201ENST00000436160 681 ntBASIC17.07■□□□□ 0.32
RPRD1AQ96P16 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPRD1AQ96P16 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.06■□□□□ 0.32
RPRD1AQ96P16 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 AC020765.3-201ENST00000613051 740 ntBASIC17.06■□□□□ 0.32
RPRD1AQ96P16 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RPRD1AQ96P16 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.05■□□□□ 0.32
RPRD1AQ96P16 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RPRD1AQ96P16 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms