Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 IGHV3-62-201ENST00000520057 340 ntBASIC15.42■□□□□ 0.06
BEST3Q8N1M1 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 AC124947.2-201ENST00000547118 1133 ntBASIC15.42■□□□□ 0.06
BEST3Q8N1M1 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 WASH6P-202ENST00000359512 1437 ntBASIC15.42■□□□□ 0.06
BEST3Q8N1M1 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
BEST3Q8N1M1 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.41■□□□□ 0.06
BEST3Q8N1M1 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 MIR3909-201ENST00000579518 119 ntBASIC15.41■□□□□ 0.06
BEST3Q8N1M1 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
BEST3Q8N1M1 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 UXT-AS1-201ENST00000590504 1525 ntBASIC15.4■□□□□ 0.06
BEST3Q8N1M1 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 FAM58DP-201ENST00000428076 619 ntBASIC15.4■□□□□ 0.06
BEST3Q8N1M1 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 MIR4492-201ENST00000581627 80 ntBASIC15.4■□□□□ 0.06
BEST3Q8N1M1 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms