Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TPM4P67936 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 INTS4P1-201ENST00000438455 1935 ntBASIC18.67■□□□□ 0.58
TPM4P67936 GGT4P-201ENST00000623672 1708 ntBASIC18.67■□□□□ 0.58
TPM4P67936 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TPM4P67936 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 SPDYE21P-201ENST00000413323 827 ntBASIC18.67■□□□□ 0.58
TPM4P67936 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.67■□□□□ 0.58
TPM4P67936 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.67■□□□□ 0.58
TPM4P67936 BX276092.5-203ENST00000456199 560 ntBASIC18.67■□□□□ 0.58
TPM4P67936 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.67■□□□□ 0.58
TPM4P67936 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.67■□□□□ 0.58
TPM4P67936 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
TPM4P67936 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TPM4P67936 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.67■□□□□ 0.58
TPM4P67936 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.67■□□□□ 0.58
TPM4P67936 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.67■□□□□ 0.58
TPM4P67936 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TPM4P67936 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 AC243591.1-201ENST00000452967 1364 ntBASIC18.67■□□□□ 0.58
TPM4P67936 AL136379.1-201ENST00000623471 2642 ntBASIC18.67■□□□□ 0.58
TPM4P67936 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC18.67■□□□□ 0.58
TPM4P67936 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.66■□□□□ 0.58
TPM4P67936 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.66■□□□□ 0.58
TPM4P67936 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
TPM4P67936 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 CHCHD2P8-201ENST00000429873 447 ntBASIC18.66■□□□□ 0.58
TPM4P67936 AC091607.1-201ENST00000490318 1060 ntBASIC18.66■□□□□ 0.58
TPM4P67936 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.66■□□□□ 0.58
TPM4P67936 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TPM4P67936 Z69720.1-201ENST00000601483 472 ntBASIC18.66■□□□□ 0.58
TPM4P67936 AL121672.3-201ENST00000608644 468 ntBASIC18.66■□□□□ 0.58
TPM4P67936 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TPM4P67936 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TPM4P67936 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC18.66■□□□□ 0.58
TPM4P67936 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TPM4P67936 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.66■□□□□ 0.58
TPM4P67936 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM4P67936 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 AL603832.2-201ENST00000566195 2125 ntBASIC18.65■□□□□ 0.58
TPM4P67936 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
TPM4P67936 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.65■□□□□ 0.58
TPM4P67936 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 OR2I1P-209ENST00000641730 5365 ntBASIC18.65■□□□□ 0.58
TPM4P67936 AC023824.1-201ENST00000562945 2975 ntBASIC18.65■□□□□ 0.58
TPM4P67936 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TPM4P67936 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
TPM4P67936 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.65■□□□□ 0.58
TPM4P67936 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TPM4P67936 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.65■□□□□ 0.58
TPM4P67936 AC096582.2-201ENST00000510860 516 ntBASIC18.65■□□□□ 0.58
TPM4P67936 AC022616.7-201ENST00000525383 220 ntBASIC18.65■□□□□ 0.58
TPM4P67936 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.65■□□□□ 0.58
TPM4P67936 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.65■□□□□ 0.58
TPM4P67936 NTF6B-201ENST00000591913 560 ntBASIC18.65■□□□□ 0.58
TPM4P67936 TERC-201ENST00000602385 541 ntBASIC18.65■□□□□ 0.58
TPM4P67936 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.65■□□□□ 0.58
TPM4P67936 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.65■□□□□ 0.58
TPM4P67936 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms