Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.22■□□□□ 0.67
SCN4AP35499 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.22■□□□□ 0.67
SCN4AP35499 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.21■□□□□ 0.67
SCN4AP35499 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 AC134312.5-201ENST00000568031 1313 ntBASIC19.21■□□□□ 0.67
SCN4AP35499 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN4AP35499 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN4AP35499 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN4AP35499 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.21■□□□□ 0.67
SCN4AP35499 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.21■□□□□ 0.67
SCN4AP35499 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC19.21■□□□□ 0.67
SCN4AP35499 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.21■□□□□ 0.67
SCN4AP35499 AC005252.2-201ENST00000624630 1141 ntBASIC19.21■□□□□ 0.67
SCN4AP35499 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.21■□□□□ 0.67
SCN4AP35499 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 GRN-214ENST00000589265 1632 ntTSL 5 BASIC19.21■□□□□ 0.67
SCN4AP35499 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
SCN4AP35499 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN4AP35499 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.21■□□□□ 0.67
SCN4AP35499 AC253536.4-201ENST00000440539 267 ntBASIC19.21■□□□□ 0.67
SCN4AP35499 RPL13P2-201ENST00000440687 659 ntBASIC19.21■□□□□ 0.67
SCN4AP35499 EIF4HP1-201ENST00000453115 687 ntBASIC19.21■□□□□ 0.67
SCN4AP35499 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.21■□□□□ 0.67
SCN4AP35499 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.21■□□□□ 0.67
SCN4AP35499 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN4AP35499 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
SCN4AP35499 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.66
SCN4AP35499 GPAA1P2-202ENST00000606848 1787 ntBASIC19.21■□□□□ 0.66
SCN4AP35499 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
SCN4AP35499 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.66
SCN4AP35499 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.66
SCN4AP35499 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.2■□□□□ 0.66
SCN4AP35499 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.2■□□□□ 0.66
SCN4AP35499 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.2■□□□□ 0.66
SCN4AP35499 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.2■□□□□ 0.66
SCN4AP35499 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.2■□□□□ 0.66
SCN4AP35499 AC022137.2-201ENST00000503482 481 ntBASIC19.2■□□□□ 0.66
SCN4AP35499 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC19.2■□□□□ 0.66
SCN4AP35499 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19.2■□□□□ 0.66
SCN4AP35499 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SCN4AP35499 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC19.2■□□□□ 0.66
SCN4AP35499 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.2■□□□□ 0.66
SCN4AP35499 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN4AP35499 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN4AP35499 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCN4AP35499 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN4AP35499 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN4AP35499 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN4AP35499 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
SCN4AP35499 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN4AP35499 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN4AP35499 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN4AP35499 AKR7A2P1-201ENST00000460134 915 ntBASIC19.19■□□□□ 0.66
SCN4AP35499 TMEM198B-204ENST00000484016 896 ntBASIC19.19■□□□□ 0.66
SCN4AP35499 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN4AP35499 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN4AP35499 CHMP4BP1-201ENST00000556017 588 ntBASIC19.19■□□□□ 0.66
SCN4AP35499 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.19■□□□□ 0.66
SCN4AP35499 MIR4722-201ENST00000578292 60 ntBASIC19.19■□□□□ 0.66
SCN4AP35499 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN4AP35499 CLUHP6-201ENST00000580789 941 ntBASIC19.19■□□□□ 0.66
SCN4AP35499 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.19■□□□□ 0.66
SCN4AP35499 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN4AP35499 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SCN4AP35499 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN4AP35499 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms