Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PRAL-201ENST00000624952 3286 ntBASIC12.54□□□□□ -0.4
HLA-DQA1P01909 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 AC023908.3-201ENST00000564211 3047 ntBASIC12.54□□□□□ -0.4
HLA-DQA1P01909 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AC104581.4-201ENST00000623126 3052 ntBASIC12.53□□□□□ -0.4
HLA-DQA1P01909 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 LINC00895-201ENST00000629028 1637 ntBASIC12.53□□□□□ -0.4
HLA-DQA1P01909 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 ILF2-202ENST00000368681 726 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 CCR12P-201ENST00000446203 998 ntBASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AL359258.3-201ENST00000622910 2331 ntBASIC12.53□□□□□ -0.4
HLA-DQA1P01909 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DQA1P01909 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.52□□□□□ -0.4
HLA-DQA1P01909 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DQA1P01909 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
HLA-DQA1P01909 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DQA1P01909 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DQA1P01909 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DQA1P01909 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DQA1P01909 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 AC026396.1-201ENST00000419388 421 ntBASIC12.52□□□□□ -0.41
HLA-DQA1P01909 AL596275.1-201ENST00000423464 877 ntBASIC12.52□□□□□ -0.41
HLA-DQA1P01909 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms