Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS9D1Q9Y2B5 AC006449.5-201ENST00000610658 2098 ntBASIC16.56■□□□□ 0.24
VPS9D1Q9Y2B5 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS9D1Q9Y2B5 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VPS9D1Q9Y2B5 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VPS9D1Q9Y2B5 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS9D1Q9Y2B5 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
VPS9D1Q9Y2B5 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS9D1Q9Y2B5 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS9D1Q9Y2B5 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 AC009947.1-201ENST00000444350 727 ntBASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 AC079776.4-201ENST00000511039 504 ntBASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 IGHV3-22-201ENST00000520721 359 ntBASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS9D1Q9Y2B5 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 PCGF3-213ENST00000620529 1899 ntBASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 PMS2P4-201ENST00000412466 1052 ntBASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 AL513480.1-201ENST00000451731 511 ntBASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 RNA5SP419-201ENST00000515908 135 ntBASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 RNA5SP415-201ENST00000517246 115 ntBASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 ALOX12P2-203ENST00000570921 1945 ntBASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS9D1Q9Y2B5 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms