Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.88■□□□□ 0.93
NPHP1O15259 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.88■□□□□ 0.93
NPHP1O15259 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.88■□□□□ 0.93
NPHP1O15259 HLA-V-204ENST00000476601 1289 ntBASIC20.88■□□□□ 0.93
NPHP1O15259 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.88■□□□□ 0.93
NPHP1O15259 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
NPHP1O15259 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.88■□□□□ 0.93
NPHP1O15259 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP1O15259 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.88■□□□□ 0.93
NPHP1O15259 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP1O15259 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC20.88■□□□□ 0.93
NPHP1O15259 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
NPHP1O15259 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP1O15259 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
NPHP1O15259 AL035456.1-201ENST00000456064 1369 ntBASIC20.87■□□□□ 0.93
NPHP1O15259 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
NPHP1O15259 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
NPHP1O15259 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
NPHP1O15259 COX5BP8-201ENST00000416911 349 ntBASIC20.87■□□□□ 0.93
NPHP1O15259 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
NPHP1O15259 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.87■□□□□ 0.93
NPHP1O15259 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.87■□□□□ 0.93
NPHP1O15259 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 AL589739.1-201ENST00000607720 493 ntBASIC20.87■□□□□ 0.93
NPHP1O15259 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.87■□□□□ 0.93
NPHP1O15259 CETN4P-206ENST00000642099 2168 ntBASIC20.87■□□□□ 0.93
NPHP1O15259 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP1O15259 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.87■□□□□ 0.93
NPHP1O15259 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP1O15259 AC016396.2-201ENST00000562575 1417 ntBASIC20.87■□□□□ 0.93
NPHP1O15259 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
NPHP1O15259 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
NPHP1O15259 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.86■□□□□ 0.93
NPHP1O15259 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.86■□□□□ 0.93
NPHP1O15259 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 MEIS3P1-201ENST00000495167 958 ntBASIC20.86■□□□□ 0.93
NPHP1O15259 NAA50-208ENST00000497255 789 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP1O15259 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP1O15259 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP1O15259 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC20.86■□□□□ 0.93
NPHP1O15259 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP1O15259 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
NPHP1O15259 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP1O15259 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP1O15259 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP1O15259 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP1O15259 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP1O15259 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
NPHP1O15259 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms