Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 AC129492.6-201ENST00000611383 1305 ntBASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 AC018712.1-201ENST00000455767 687 ntBASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 AC073648.2-201ENST00000510116 352 ntBASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 AC005412.3-201ENST00000580309 715 ntBASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 AL356488.2-201ENST00000602755 427 ntBASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 AC008735.5-201ENST00000623544 497 ntBASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 LINC01144-201ENST00000626198 1710 ntBASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TCRBV7S3A2A0A539 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.89■□□□□ 0.3
TCRBV7S3A2A0A539 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.89■□□□□ 0.3
TCRBV7S3A2A0A539 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.89■□□□□ 0.3
TCRBV7S3A2A0A539 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TCRBV7S3A2A0A539 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.89■□□□□ 0.3
TCRBV7S3A2A0A539 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 KRT18P56-201ENST00000507275 550 ntBASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.89■□□□□ 0.29
TCRBV7S3A2A0A539 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 CROCCP1-201ENST00000426910 5675 ntBASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
TCRBV7S3A2A0A539 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms