Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
ERCC4Q92889 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.93■□□□□ 0.62
ERCC4Q92889 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
ERCC4Q92889 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
ERCC4Q92889 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.92■□□□□ 0.62
ERCC4Q92889 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
ERCC4Q92889 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.92■□□□□ 0.62
ERCC4Q92889 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.92■□□□□ 0.62
ERCC4Q92889 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.92■□□□□ 0.62
ERCC4Q92889 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.92■□□□□ 0.62
ERCC4Q92889 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.92■□□□□ 0.62
ERCC4Q92889 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.92■□□□□ 0.62
ERCC4Q92889 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
ERCC4Q92889 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.92■□□□□ 0.62
ERCC4Q92889 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.92■□□□□ 0.62
ERCC4Q92889 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.92■□□□□ 0.62
ERCC4Q92889 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.92■□□□□ 0.62
ERCC4Q92889 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
ERCC4Q92889 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.92■□□□□ 0.62
ERCC4Q92889 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
ERCC4Q92889 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.92■□□□□ 0.62
ERCC4Q92889 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
ERCC4Q92889 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ERCC4Q92889 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.92■□□□□ 0.62
ERCC4Q92889 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
ERCC4Q92889 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.91■□□□□ 0.62
ERCC4Q92889 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
ERCC4Q92889 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.91■□□□□ 0.62
ERCC4Q92889 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.91■□□□□ 0.62
ERCC4Q92889 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.91■□□□□ 0.62
ERCC4Q92889 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 KRT16P4-201ENST00000453883 522 ntBASIC18.91■□□□□ 0.62
ERCC4Q92889 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
ERCC4Q92889 AC106795.1-205ENST00000512851 1056 ntBASIC18.91■□□□□ 0.62
ERCC4Q92889 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.91■□□□□ 0.62
ERCC4Q92889 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 AL365203.3-201ENST00000609742 2057 ntBASIC18.91■□□□□ 0.62
ERCC4Q92889 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ERCC4Q92889 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
ERCC4Q92889 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
ERCC4Q92889 AL596257.1-201ENST00000641463 2694 ntBASIC18.9■□□□□ 0.62
ERCC4Q92889 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
ERCC4Q92889 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
ERCC4Q92889 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
ERCC4Q92889 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.9■□□□□ 0.62
ERCC4Q92889 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.9■□□□□ 0.62
ERCC4Q92889 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms