Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
CX3CR1P49238 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CX3CR1P49238 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC14.67□□□□□ -0.06
CX3CR1P49238 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 RPS2P1-201ENST00000434010 821 ntBASIC14.67□□□□□ -0.06
CX3CR1P49238 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.67□□□□□ -0.06
CX3CR1P49238 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 OR7E14P-202ENST00000530490 1290 ntBASIC14.67□□□□□ -0.06
CX3CR1P49238 BMF-207ENST00000559701 630 ntTSL 3 BASIC14.67□□□□□ -0.06
CX3CR1P49238 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CX3CR1P49238 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 CYP2T1P-202ENST00000641596 2535 ntBASIC14.67□□□□□ -0.06
CX3CR1P49238 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC14.67□□□□□ -0.06
CX3CR1P49238 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.67□□□□□ -0.06
CX3CR1P49238 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.67□□□□□ -0.06
CX3CR1P49238 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CX3CR1P49238 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CR1P49238 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.66□□□□□ -0.06
CX3CR1P49238 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CX3CR1P49238 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.66□□□□□ -0.06
CX3CR1P49238 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CX3CR1P49238 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 AC022188.1-201ENST00000620960 1664 ntBASIC14.66□□□□□ -0.06
CX3CR1P49238 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.66□□□□□ -0.06
CX3CR1P49238 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
CX3CR1P49238 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 RPS15P9-201ENST00000494093 319 ntBASIC14.66□□□□□ -0.06
CX3CR1P49238 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC14.66□□□□□ -0.06
CX3CR1P49238 SLC25A6P2-201ENST00000497974 877 ntBASIC14.66□□□□□ -0.06
CX3CR1P49238 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC14.66□□□□□ -0.06
CX3CR1P49238 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC14.66□□□□□ -0.06
CX3CR1P49238 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 REXO1L3P-201ENST00000622202 1288 ntBASIC14.66□□□□□ -0.06
CX3CR1P49238 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms