Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PTPN4P29074 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
PTPN4P29074 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.79■□□□□ 0.28
PTPN4P29074 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTPN4P29074 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN4P29074 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN4P29074 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 AC099063.4-201ENST00000641099 1602 ntBASIC16.78■□□□□ 0.28
PTPN4P29074 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTPN4P29074 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN4P29074 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.78■□□□□ 0.28
PTPN4P29074 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 AC021087.4-201ENST00000563761 564 ntBASIC16.78■□□□□ 0.28
PTPN4P29074 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN4P29074 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.78■□□□□ 0.28
PTPN4P29074 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PTPN4P29074 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN4P29074 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
PTPN4P29074 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN4P29074 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
PTPN4P29074 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 AC144831.1-201ENST00000573312 2656 ntBASIC16.78■□□□□ 0.28
PTPN4P29074 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN4P29074 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN4P29074 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.78■□□□□ 0.28
PTPN4P29074 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.78■□□□□ 0.28
PTPN4P29074 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTPN4P29074 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PTPN4P29074 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN4P29074 ZNF259P1-201ENST00000407656 1365 ntBASIC16.77■□□□□ 0.28
PTPN4P29074 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN4P29074 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN4P29074 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN4P29074 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.77■□□□□ 0.28
PTPN4P29074 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PTPN4P29074 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN4P29074 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN4P29074 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PTPN4P29074 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN4P29074 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.77■□□□□ 0.28
PTPN4P29074 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.77■□□□□ 0.28
PTPN4P29074 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN4P29074 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.77■□□□□ 0.28
PTPN4P29074 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.77■□□□□ 0.28
PTPN4P29074 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.77■□□□□ 0.28
PTPN4P29074 SART3-203ENST00000546611 1184 ntBASIC16.77■□□□□ 0.28
PTPN4P29074 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN4P29074 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN4P29074 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTPN4P29074 AC116407.3-201ENST00000623905 1129 ntBASIC16.77■□□□□ 0.28
PTPN4P29074 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN4P29074 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN4P29074 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN4P29074 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN4P29074 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN4P29074 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN4P29074 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.77■□□□□ 0.27
PTPN4P29074 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.77■□□□□ 0.27
PTPN4P29074 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN4P29074 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN4P29074 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.77■□□□□ 0.27
PTPN4P29074 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.77■□□□□ 0.27
PTPN4P29074 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTPN4P29074 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.76■□□□□ 0.27
PTPN4P29074 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
PTPN4P29074 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.76■□□□□ 0.27
PTPN4P29074 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms