Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 SPDYE12P-201ENST00000618416 771 ntBASIC19.51■□□□□ 0.71
HLA-DOAP06340 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DOAP06340 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.51■□□□□ 0.71
HLA-DOAP06340 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 AC236430.1-201ENST00000402231 743 ntBASIC19.5■□□□□ 0.71
HLA-DOAP06340 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 UGT1A2P-201ENST00000454886 866 ntBASIC19.5■□□□□ 0.71
HLA-DOAP06340 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 TERF1P3-201ENST00000505638 1227 ntBASIC19.5■□□□□ 0.71
HLA-DOAP06340 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 MAX-210ENST00000555419 765 ntTSL 5 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 AC100757.3-201ENST00000622361 1406 ntBASIC19.5■□□□□ 0.71
HLA-DOAP06340 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HLA-DOAP06340 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DOAP06340 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 GPAA1P2-202ENST00000606848 1787 ntBASIC19.49■□□□□ 0.71
HLA-DOAP06340 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 AC002472.2-201ENST00000442739 958 ntBASIC19.49■□□□□ 0.71
HLA-DOAP06340 FAM207CP-201ENST00000443486 507 ntBASIC19.49■□□□□ 0.71
HLA-DOAP06340 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 HLA-V-204ENST00000476601 1289 ntBASIC19.49■□□□□ 0.71
HLA-DOAP06340 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 SATB1-217ENST00000493952 626 ntTSL 3 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 AL138828.2-201ENST00000615812 383 ntBASIC19.49■□□□□ 0.71
HLA-DOAP06340 GPER1-207ENST00000619052 571 ntTSL 2 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.49■□□□□ 0.71
HLA-DOAP06340 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DOAP06340 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 AL645608.8-201ENST00000606034 2086 ntBASIC19.48■□□□□ 0.71
HLA-DOAP06340 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms