Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SIX3O95343 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX3O95343 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 AL596087.1-201ENST00000400979 1969 ntBASIC16.29■□□□□ 0.2
SIX3O95343 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX3O95343 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX3O95343 HNRNPDP1-201ENST00000439535 754 ntBASIC16.29■□□□□ 0.2
SIX3O95343 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 EMBP1-201ENST00000458200 901 ntBASIC16.29■□□□□ 0.2
SIX3O95343 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SIX3O95343 AC073648.2-201ENST00000510116 352 ntBASIC16.29■□□□□ 0.2
SIX3O95343 AC136632.2-201ENST00000512891 861 ntBASIC16.29■□□□□ 0.2
SIX3O95343 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.29■□□□□ 0.2
SIX3O95343 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.29■□□□□ 0.2
SIX3O95343 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX3O95343 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.29■□□□□ 0.2
SIX3O95343 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SIX3O95343 AL353732.1-201ENST00000569618 1459 ntBASIC16.29■□□□□ 0.2
SIX3O95343 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SIX3O95343 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SIX3O95343 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.28■□□□□ 0.2
SIX3O95343 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.28■□□□□ 0.2
SIX3O95343 AC012640.2-201ENST00000561606 901 ntBASIC16.28■□□□□ 0.2
SIX3O95343 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.28■□□□□ 0.2
SIX3O95343 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.28■□□□□ 0.2
SIX3O95343 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.28■□□□□ 0.2
SIX3O95343 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
SIX3O95343 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SIX3O95343 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SIX3O95343 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX3O95343 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.27■□□□□ 0.2
SIX3O95343 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SIX3O95343 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
SIX3O95343 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SIX3O95343 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SIX3O95343 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SIX3O95343 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms