Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PRELID1P1-202ENST00000567272 903 ntBASIC14.61□□□□□ -0.07
NKX3-1Q99801 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 CLEC4GP1-201ENST00000596555 870 ntBASIC14.61□□□□□ -0.07
NKX3-1Q99801 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 AC010491.1-201ENST00000563101 2797 ntBASIC14.61□□□□□ -0.07
NKX3-1Q99801 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 ATP5G2P1-201ENST00000433580 426 ntBASIC14.6□□□□□ -0.07
NKX3-1Q99801 KRT17P6-201ENST00000453795 1220 ntBASIC14.6□□□□□ -0.07
NKX3-1Q99801 MIR3652-201ENST00000579335 131 ntBASIC14.6□□□□□ -0.07
NKX3-1Q99801 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 AC012313.10-201ENST00000623509 926 ntBASIC14.6□□□□□ -0.07
NKX3-1Q99801 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 TUBB8P12-201ENST00000308911 1335 ntBASIC14.6□□□□□ -0.07
NKX3-1Q99801 TUBB7P-202ENST00000428444 1305 ntBASIC14.6□□□□□ -0.07
NKX3-1Q99801 TUBB8P7-204ENST00000567960 1332 ntBASIC14.6□□□□□ -0.07
NKX3-1Q99801 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX3-1Q99801 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX3-1Q99801 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms