Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
SOX3P41225 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 KRT18P13-201ENST00000400056 1290 ntBASIC15.73■□□□□ 0.11
SOX3P41225 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
SOX3P41225 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 SLC25A6P2-201ENST00000497974 877 ntBASIC15.73■□□□□ 0.11
SOX3P41225 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.73■□□□□ 0.11
SOX3P41225 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.73■□□□□ 0.11
SOX3P41225 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.73■□□□□ 0.11
SOX3P41225 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.73■□□□□ 0.11
SOX3P41225 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.73■□□□□ 0.11
SOX3P41225 AC010507.1-201ENST00000633895 436 ntBASIC15.73■□□□□ 0.11
SOX3P41225 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
SOX3P41225 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SOX3P41225 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
SOX3P41225 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.73■□□□□ 0.11
SOX3P41225 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX3P41225 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 AC006449.5-201ENST00000610658 2098 ntBASIC15.72■□□□□ 0.11
SOX3P41225 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SOX3P41225 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SOX3P41225 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX3P41225 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX3P41225 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.72■□□□□ 0.11
SOX3P41225 AC002347.1-201ENST00000569543 541 ntBASIC15.72■□□□□ 0.11
SOX3P41225 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.72■□□□□ 0.11
SOX3P41225 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.72■□□□□ 0.11
SOX3P41225 AL662844.4-201ENST00000606367 2838 ntBASIC15.72■□□□□ 0.11
SOX3P41225 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX3P41225 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX3P41225 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.72■□□□□ 0.11
SOX3P41225 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.72■□□□□ 0.11
SOX3P41225 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SOX3P41225 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX3P41225 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.72■□□□□ 0.11
SOX3P41225 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
SOX3P41225 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.71■□□□□ 0.11
SOX3P41225 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.71■□□□□ 0.11
SOX3P41225 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.71■□□□□ 0.11
SOX3P41225 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
SOX3P41225 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.71■□□□□ 0.11
SOX3P41225 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.71■□□□□ 0.11
SOX3P41225 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.71■□□□□ 0.11
SOX3P41225 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.71■□□□□ 0.11
SOX3P41225 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.71■□□□□ 0.11
SOX3P41225 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.71■□□□□ 0.11
SOX3P41225 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.71■□□□□ 0.11
SOX3P41225 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX3P41225 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
SOX3P41225 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.71■□□□□ 0.1
SOX3P41225 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms