Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.02■□□□□ -0
SPTA1P02549 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.02■□□□□ -0
SPTA1P02549 LINC00895-201ENST00000629028 1637 ntBASIC15.02■□□□□ -0
SPTA1P02549 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
SPTA1P02549 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
SPTA1P02549 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 LYSMD4-203ENST00000378904 2122 ntBASIC15.02■□□□□ -0
SPTA1P02549 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.02■□□□□ -0
SPTA1P02549 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.02■□□□□ -0
SPTA1P02549 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.02■□□□□ -0
SPTA1P02549 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
SPTA1P02549 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.02■□□□□ -0
SPTA1P02549 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.02■□□□□ -0
SPTA1P02549 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.02■□□□□ -0
SPTA1P02549 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.02■□□□□ -0
SPTA1P02549 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.02■□□□□ -0
SPTA1P02549 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.02■□□□□ -0
SPTA1P02549 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.02■□□□□ -0
SPTA1P02549 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SPTA1P02549 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SPTA1P02549 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.02□□□□□ -0.01
SPTA1P02549 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SPTA1P02549 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SPTA1P02549 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SPTA1P02549 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
SPTA1P02549 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.02□□□□□ -0.01
SPTA1P02549 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SPTA1P02549 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SPTA1P02549 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.02□□□□□ -0.01
SPTA1P02549 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC15.02□□□□□ -0.01
SPTA1P02549 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.02□□□□□ -0.01
SPTA1P02549 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SPTA1P02549 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.02□□□□□ -0.01
SPTA1P02549 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.02□□□□□ -0.01
SPTA1P02549 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.02□□□□□ -0.01
SPTA1P02549 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.02□□□□□ -0.01
SPTA1P02549 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.02□□□□□ -0.01
SPTA1P02549 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.02□□□□□ -0.01
SPTA1P02549 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SPTA1P02549 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
SPTA1P02549 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
SPTA1P02549 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.01□□□□□ -0.01
SPTA1P02549 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.01□□□□□ -0.01
SPTA1P02549 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 BOLA2P3-201ENST00000404566 256 ntBASIC15.01□□□□□ -0.01
SPTA1P02549 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.01□□□□□ -0.01
SPTA1P02549 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.01□□□□□ -0.01
SPTA1P02549 AL033527.5-201ENST00000641382 801 ntBASIC15.01□□□□□ -0.01
SPTA1P02549 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 FOXO1B-201ENST00000504678 1527 ntBASIC15.01□□□□□ -0.01
SPTA1P02549 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 AL355312.1-201ENST00000407115 2176 ntBASIC15.01□□□□□ -0.01
SPTA1P02549 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
SPTA1P02549 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SPTA1P02549 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.01□□□□□ -0.01
SPTA1P02549 RPL7P3-201ENST00000441388 714 ntBASIC15.01□□□□□ -0.01
SPTA1P02549 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.01□□□□□ -0.01
SPTA1P02549 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.01□□□□□ -0.01
SPTA1P02549 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SPTA1P02549 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.01□□□□□ -0.01
SPTA1P02549 RRP7BP-205ENST00000566851 833 ntBASIC15.01□□□□□ -0.01
SPTA1P02549 AC092337.1-201ENST00000568699 1129 ntBASIC15.01□□□□□ -0.01
SPTA1P02549 MIR4492-201ENST00000581627 80 ntBASIC15.01□□□□□ -0.01
SPTA1P02549 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SPTA1P02549 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SPTA1P02549 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC15□□□□□ -0.01
SPTA1P02549 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC15□□□□□ -0.01
SPTA1P02549 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms