Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.07■□□□□ 0.64
SMARCA1P28370 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.07■□□□□ 0.64
SMARCA1P28370 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.07■□□□□ 0.64
SMARCA1P28370 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.07■□□□□ 0.64
SMARCA1P28370 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.07■□□□□ 0.64
SMARCA1P28370 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.07■□□□□ 0.64
SMARCA1P28370 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 ME2P1-201ENST00000426028 1970 ntBASIC19.06■□□□□ 0.64
SMARCA1P28370 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SMARCA1P28370 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCA1P28370 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SMARCA1P28370 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SMARCA1P28370 FOXO1B-201ENST00000504678 1527 ntBASIC19.06■□□□□ 0.64
SMARCA1P28370 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCA1P28370 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCA1P28370 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCA1P28370 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SMARCA1P28370 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.06■□□□□ 0.64
SMARCA1P28370 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.06■□□□□ 0.64
SMARCA1P28370 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.06■□□□□ 0.64
SMARCA1P28370 AC098859.1-201ENST00000502915 1238 ntBASIC19.06■□□□□ 0.64
SMARCA1P28370 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCA1P28370 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19.06■□□□□ 0.64
SMARCA1P28370 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.06■□□□□ 0.64
SMARCA1P28370 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCA1P28370 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCA1P28370 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCA1P28370 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.06■□□□□ 0.64
SMARCA1P28370 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCA1P28370 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCA1P28370 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCA1P28370 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCA1P28370 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SMARCA1P28370 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCA1P28370 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.06■□□□□ 0.64
SMARCA1P28370 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.05■□□□□ 0.64
SMARCA1P28370 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.05■□□□□ 0.64
SMARCA1P28370 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.05■□□□□ 0.64
SMARCA1P28370 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.05■□□□□ 0.64
SMARCA1P28370 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.05■□□□□ 0.64
SMARCA1P28370 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SMARCA1P28370 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.05■□□□□ 0.64
SMARCA1P28370 FAM58DP-201ENST00000428076 619 ntBASIC19.05■□□□□ 0.64
SMARCA1P28370 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.05■□□□□ 0.64
SMARCA1P28370 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.05■□□□□ 0.64
SMARCA1P28370 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.05■□□□□ 0.64
SMARCA1P28370 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.05■□□□□ 0.64
SMARCA1P28370 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.05■□□□□ 0.64
SMARCA1P28370 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SMARCA1P28370 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.05■□□□□ 0.64
SMARCA1P28370 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.05■□□□□ 0.64
SMARCA1P28370 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SMARCA1P28370 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SMARCA1P28370 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCA1P28370 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.04■□□□□ 0.64
SMARCA1P28370 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
SMARCA1P28370 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC19.04■□□□□ 0.64
SMARCA1P28370 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SMARCA1P28370 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 AC011676.5-201ENST00000624864 2660 ntBASIC19.04■□□□□ 0.64
SMARCA1P28370 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.04■□□□□ 0.64
SMARCA1P28370 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.04■□□□□ 0.64
SMARCA1P28370 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 GPS2P2-201ENST00000430745 888 ntBASIC19.04■□□□□ 0.64
SMARCA1P28370 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.04■□□□□ 0.64
SMARCA1P28370 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.04■□□□□ 0.64
SMARCA1P28370 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 AL512356.2-201ENST00000546955 174 ntBASIC19.04■□□□□ 0.64
SMARCA1P28370 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.04■□□□□ 0.64
SMARCA1P28370 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 SPTSSB-204ENST00000617024 1292 ntBASIC19.04■□□□□ 0.64
SMARCA1P28370 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms