Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC19.19■□□□□ 0.66
MBD3O95983 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC19.19■□□□□ 0.66
MBD3O95983 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.19■□□□□ 0.66
MBD3O95983 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.19■□□□□ 0.66
MBD3O95983 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.19■□□□□ 0.66
MBD3O95983 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
MBD3O95983 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.19■□□□□ 0.66
MBD3O95983 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.19■□□□□ 0.66
MBD3O95983 PMPCAP1-201ENST00000508114 1576 ntBASIC19.19■□□□□ 0.66
MBD3O95983 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC19.18■□□□□ 0.66
MBD3O95983 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
MBD3O95983 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
MBD3O95983 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.18■□□□□ 0.66
MBD3O95983 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.18■□□□□ 0.66
MBD3O95983 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.18■□□□□ 0.66
MBD3O95983 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
MBD3O95983 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.18■□□□□ 0.66
MBD3O95983 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.18■□□□□ 0.66
MBD3O95983 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.18■□□□□ 0.66
MBD3O95983 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC19.18■□□□□ 0.66
MBD3O95983 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD3O95983 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.17■□□□□ 0.66
MBD3O95983 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
MBD3O95983 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.17■□□□□ 0.66
MBD3O95983 TSPY5P-201ENST00000426936 936 ntBASIC19.17■□□□□ 0.66
MBD3O95983 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.17■□□□□ 0.66
MBD3O95983 TERC-201ENST00000602385 541 ntBASIC19.17■□□□□ 0.66
MBD3O95983 IGHV3-41-201ENST00000613121 348 ntBASIC19.17■□□□□ 0.66
MBD3O95983 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
MBD3O95983 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.17■□□□□ 0.66
MBD3O95983 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
MBD3O95983 AC243591.1-201ENST00000452967 1364 ntBASIC19.17■□□□□ 0.66
MBD3O95983 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD3O95983 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.17■□□□□ 0.66
MBD3O95983 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
MBD3O95983 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
MBD3O95983 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MBD3O95983 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.16■□□□□ 0.66
MBD3O95983 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.16■□□□□ 0.66
MBD3O95983 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.16■□□□□ 0.66
MBD3O95983 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.16■□□□□ 0.66
MBD3O95983 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.16■□□□□ 0.66
MBD3O95983 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.16■□□□□ 0.66
MBD3O95983 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.16■□□□□ 0.66
MBD3O95983 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC19.16■□□□□ 0.66
MBD3O95983 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
MBD3O95983 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
MBD3O95983 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD3O95983 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.16■□□□□ 0.66
MBD3O95983 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms