Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHA3Q9Y5H8 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA3Q9Y5H8 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA3Q9Y5H8 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.98■■□□□ 1.59
PCDHA3Q9Y5H8 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA3Q9Y5H8 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA3Q9Y5H8 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA3Q9Y5H8 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA3Q9Y5H8 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA3Q9Y5H8 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 THRA-202ENST00000394121 2260 ntTSL 2 BASIC24.97■■□□□ 1.59
PCDHA3Q9Y5H8 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA3Q9Y5H8 AP003733.4-201ENST00000623785 1697 ntBASIC24.96■■□□□ 1.59
PCDHA3Q9Y5H8 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA3Q9Y5H8 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC24.96■■□□□ 1.59
PCDHA3Q9Y5H8 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA3Q9Y5H8 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.95■■□□□ 1.59
PCDHA3Q9Y5H8 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
PCDHA3Q9Y5H8 MIR3960-201ENST00000583311 91 ntBASIC24.95■■□□□ 1.58
PCDHA3Q9Y5H8 MIR7108-201ENST00000614319 87 ntBASIC24.95■■□□□ 1.58
PCDHA3Q9Y5H8 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
PCDHA3Q9Y5H8 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHA3Q9Y5H8 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHA3Q9Y5H8 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHA3Q9Y5H8 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
PCDHA3Q9Y5H8 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC24.94■■□□□ 1.58
PCDHA3Q9Y5H8 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
PCDHA3Q9Y5H8 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
PCDHA3Q9Y5H8 SMPD5-203ENST00000639008 1464 ntBASIC24.94■■□□□ 1.58
PCDHA3Q9Y5H8 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
PCDHA3Q9Y5H8 AC092296.2-201ENST00000589470 999 ntBASIC24.93■■□□□ 1.58
PCDHA3Q9Y5H8 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHA3Q9Y5H8 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHA3Q9Y5H8 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA3Q9Y5H8 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
PCDHA3Q9Y5H8 MIR639-201ENST00000384974 98 ntBASIC24.91■■□□□ 1.58
PCDHA3Q9Y5H8 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.91■■□□□ 1.58
PCDHA3Q9Y5H8 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PCDHA3Q9Y5H8 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA3Q9Y5H8 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA3Q9Y5H8 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA3Q9Y5H8 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA3Q9Y5H8 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC24.89■■□□□ 1.58
PCDHA3Q9Y5H8 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
PCDHA3Q9Y5H8 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.89■■□□□ 1.58
PCDHA3Q9Y5H8 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
PCDHA3Q9Y5H8 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHA3Q9Y5H8 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
PCDHA3Q9Y5H8 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC24.88■■□□□ 1.57
PCDHA3Q9Y5H8 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHA3Q9Y5H8 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
PCDHA3Q9Y5H8 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC24.88■■□□□ 1.57
PCDHA3Q9Y5H8 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHA3Q9Y5H8 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHA3Q9Y5H8 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.87■■□□□ 1.57
PCDHA3Q9Y5H8 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA3Q9Y5H8 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA3Q9Y5H8 TPT1-202ENST00000379055 948 ntTSL 2 BASIC24.87■■□□□ 1.57
PCDHA3Q9Y5H8 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA3Q9Y5H8 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.87■■□□□ 1.57
PCDHA3Q9Y5H8 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
PCDHA3Q9Y5H8 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA3Q9Y5H8 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA3Q9Y5H8 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA3Q9Y5H8 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.86■■□□□ 1.57
PCDHA3Q9Y5H8 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.86■■□□□ 1.57
PCDHA3Q9Y5H8 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
PCDHA3Q9Y5H8 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA3Q9Y5H8 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA3Q9Y5H8 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHA3Q9Y5H8 ECEL1P2-201ENST00000461596 1295 ntBASIC24.85■■□□□ 1.57
PCDHA3Q9Y5H8 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.85■■□□□ 1.57
PCDHA3Q9Y5H8 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHA3Q9Y5H8 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHA3Q9Y5H8 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA3Q9Y5H8 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA3Q9Y5H8 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC24.84■■□□□ 1.57
PCDHA3Q9Y5H8 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms