Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.36■■□□□ 1.33
PCDHGA4Q9Y5G9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.36■■□□□ 1.33
PCDHGA4Q9Y5G9 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHGA4Q9Y5G9 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.36■■□□□ 1.33
PCDHGA4Q9Y5G9 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHGA4Q9Y5G9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHGA4Q9Y5G9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHGA4Q9Y5G9 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.35■■□□□ 1.33
PCDHGA4Q9Y5G9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.35■■□□□ 1.33
PCDHGA4Q9Y5G9 RAP2CP1-202ENST00000605179 643 ntBASIC23.35■■□□□ 1.33
PCDHGA4Q9Y5G9 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHGA4Q9Y5G9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.35■■□□□ 1.33
PCDHGA4Q9Y5G9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHGA4Q9Y5G9 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 AC009299.2-201ENST00000482477 511 ntBASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 SPCS2P3-201ENST00000500401 656 ntBASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHGA4Q9Y5G9 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGA4Q9Y5G9 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
PCDHGA4Q9Y5G9 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGA4Q9Y5G9 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
PCDHGA4Q9Y5G9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGA4Q9Y5G9 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC23.33■■□□□ 1.33
PCDHGA4Q9Y5G9 AC139795.1-202ENST00000500444 432 ntBASIC23.33■■□□□ 1.33
PCDHGA4Q9Y5G9 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC23.33■■□□□ 1.33
PCDHGA4Q9Y5G9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGA4Q9Y5G9 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
PCDHGA4Q9Y5G9 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC23.33■■□□□ 1.32
PCDHGA4Q9Y5G9 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
PCDHGA4Q9Y5G9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.32
PCDHGA4Q9Y5G9 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHGA4Q9Y5G9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHGA4Q9Y5G9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHGA4Q9Y5G9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.32■■□□□ 1.32
PCDHGA4Q9Y5G9 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.32■■□□□ 1.32
PCDHGA4Q9Y5G9 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGA4Q9Y5G9 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
PCDHGA4Q9Y5G9 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
PCDHGA4Q9Y5G9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGA4Q9Y5G9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.31■■□□□ 1.32
PCDHGA4Q9Y5G9 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
PCDHGA4Q9Y5G9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGA4Q9Y5G9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.31■■□□□ 1.32
PCDHGA4Q9Y5G9 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.31■■□□□ 1.32
PCDHGA4Q9Y5G9 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGA4Q9Y5G9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.3■■□□□ 1.32
PCDHGA4Q9Y5G9 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGA4Q9Y5G9 YBX1P4-201ENST00000392794 808 ntBASIC23.3■■□□□ 1.32
PCDHGA4Q9Y5G9 MIR6765-201ENST00000614092 87 ntBASIC23.3■■□□□ 1.32
PCDHGA4Q9Y5G9 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGA4Q9Y5G9 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
PCDHGA4Q9Y5G9 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHGA4Q9Y5G9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHGA4Q9Y5G9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHGA4Q9Y5G9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
PCDHGA4Q9Y5G9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.29■■□□□ 1.32
PCDHGA4Q9Y5G9 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHGA4Q9Y5G9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHGA4Q9Y5G9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 AC019069.1-201ENST00000610008 1333 ntBASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA4Q9Y5G9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.27■■□□□ 1.32
PCDHGA4Q9Y5G9 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHGA4Q9Y5G9 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 HYI-210ENST00000486909 905 ntTSL 5 BASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 AC103834.1-201ENST00000520383 144 ntBASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 AC131212.1-201ENST00000613771 668 ntBASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA4Q9Y5G9 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA4Q9Y5G9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA4Q9Y5G9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA4Q9Y5G9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.25■■□□□ 1.31
PCDHGA4Q9Y5G9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.25■■□□□ 1.31
PCDHGA4Q9Y5G9 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.25■■□□□ 1.31
PCDHGA4Q9Y5G9 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA4Q9Y5G9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA4Q9Y5G9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.24■■□□□ 1.31
PCDHGA4Q9Y5G9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms