Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AC093323.1-202ENST00000635031 2045 ntBASIC21.92■■□□□ 1.1
TIMP4Q99727 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TIMP4Q99727 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
TIMP4Q99727 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TIMP4Q99727 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.91■■□□□ 1.1
TIMP4Q99727 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TIMP4Q99727 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TIMP4Q99727 AC142472.1-201ENST00000612013 1741 ntBASIC21.91■■□□□ 1.1
TIMP4Q99727 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
TIMP4Q99727 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TIMP4Q99727 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
TIMP4Q99727 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.9■■□□□ 1.1
TIMP4Q99727 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
TIMP4Q99727 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TIMP4Q99727 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
TIMP4Q99727 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
TIMP4Q99727 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TIMP4Q99727 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.89■■□□□ 1.09
TIMP4Q99727 BHLHE23-202ENST00000612929 1109 ntBASIC21.89■■□□□ 1.09
TIMP4Q99727 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TIMP4Q99727 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.89■■□□□ 1.09
TIMP4Q99727 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.89■■□□□ 1.09
TIMP4Q99727 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TIMP4Q99727 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TIMP4Q99727 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TIMP4Q99727 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.88■■□□□ 1.09
TIMP4Q99727 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TIMP4Q99727 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TIMP4Q99727 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TIMP4Q99727 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TIMP4Q99727 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.88■■□□□ 1.09
TIMP4Q99727 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
TIMP4Q99727 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.88■■□□□ 1.09
TIMP4Q99727 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TIMP4Q99727 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TIMP4Q99727 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TIMP4Q99727 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TIMP4Q99727 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TIMP4Q99727 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TIMP4Q99727 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.87■■□□□ 1.09
TIMP4Q99727 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TIMP4Q99727 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TIMP4Q99727 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TIMP4Q99727 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.86■■□□□ 1.09
TIMP4Q99727 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
TIMP4Q99727 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.86■■□□□ 1.09
TIMP4Q99727 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TIMP4Q99727 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
TIMP4Q99727 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TIMP4Q99727 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TIMP4Q99727 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TIMP4Q99727 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TIMP4Q99727 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.85■■□□□ 1.09
TIMP4Q99727 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TIMP4Q99727 RARRES2P1-201ENST00000474487 481 ntBASIC21.85■■□□□ 1.09
TIMP4Q99727 AC074183.2-201ENST00000623112 922 ntBASIC21.85■■□□□ 1.09
TIMP4Q99727 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.85■■□□□ 1.09
TIMP4Q99727 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.85■■□□□ 1.09
TIMP4Q99727 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TIMP4Q99727 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.85■■□□□ 1.09
TIMP4Q99727 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.85■■□□□ 1.09
TIMP4Q99727 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TIMP4Q99727 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
TIMP4Q99727 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TIMP4Q99727 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TIMP4Q99727 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.84■■□□□ 1.09
TIMP4Q99727 AC139795.1-202ENST00000500444 432 ntBASIC21.84■■□□□ 1.09
TIMP4Q99727 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.84■■□□□ 1.09
TIMP4Q99727 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.83■■□□□ 1.09
TIMP4Q99727 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
TIMP4Q99727 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TIMP4Q99727 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TIMP4Q99727 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
TIMP4Q99727 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
TIMP4Q99727 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
TIMP4Q99727 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TIMP4Q99727 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
TIMP4Q99727 AC010980.1-201ENST00000587192 1142 ntBASIC21.82■■□□□ 1.08
TIMP4Q99727 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
TIMP4Q99727 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
TIMP4Q99727 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TIMP4Q99727 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
TIMP4Q99727 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TIMP4Q99727 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.81■■□□□ 1.08
TIMP4Q99727 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.81■■□□□ 1.08
TIMP4Q99727 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.81■■□□□ 1.08
TIMP4Q99727 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.81■■□□□ 1.08
TIMP4Q99727 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TIMP4Q99727 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TIMP4Q99727 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TIMP4Q99727 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.8■■□□□ 1.08
TIMP4Q99727 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TIMP4Q99727 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.8■■□□□ 1.08
TIMP4Q99727 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TIMP4Q99727 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TIMP4Q99727 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TIMP4Q99727 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
TIMP4Q99727 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TIMP4Q99727 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TIMP4Q99727 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms