Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
VPS13AQ96RL7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
VPS13AQ96RL7 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VPS13AQ96RL7 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC24.1■■□□□ 1.45
VPS13AQ96RL7 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
VPS13AQ96RL7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.09■■□□□ 1.45
VPS13AQ96RL7 AC010997.5-201ENST00000609182 354 ntBASIC24.09■■□□□ 1.45
VPS13AQ96RL7 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.09■■□□□ 1.45
VPS13AQ96RL7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
VPS13AQ96RL7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
VPS13AQ96RL7 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.09■■□□□ 1.45
VPS13AQ96RL7 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
VPS13AQ96RL7 MIR4281-201ENST00000580852 62 ntBASIC24.09■■□□□ 1.45
VPS13AQ96RL7 AL355001.2-201ENST00000620617 1191 ntBASIC24.09■■□□□ 1.45
VPS13AQ96RL7 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
VPS13AQ96RL7 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.08■■□□□ 1.45
VPS13AQ96RL7 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC24.08■■□□□ 1.45
VPS13AQ96RL7 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC24.08■■□□□ 1.45
VPS13AQ96RL7 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
VPS13AQ96RL7 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
VPS13AQ96RL7 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.45
VPS13AQ96RL7 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC24.08■■□□□ 1.45
VPS13AQ96RL7 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.08■■□□□ 1.44
VPS13AQ96RL7 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
VPS13AQ96RL7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC24.07■■□□□ 1.44
VPS13AQ96RL7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC24.07■■□□□ 1.44
VPS13AQ96RL7 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
VPS13AQ96RL7 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
VPS13AQ96RL7 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
VPS13AQ96RL7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
VPS13AQ96RL7 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.06■■□□□ 1.44
VPS13AQ96RL7 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.06■■□□□ 1.44
VPS13AQ96RL7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
VPS13AQ96RL7 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
VPS13AQ96RL7 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC24.06■■□□□ 1.44
VPS13AQ96RL7 AC120024.1-201ENST00000562672 995 ntBASIC24.06■■□□□ 1.44
VPS13AQ96RL7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
VPS13AQ96RL7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
VPS13AQ96RL7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.05■■□□□ 1.44
VPS13AQ96RL7 PBX2P1-201ENST00000493219 1291 ntBASIC24.04■■□□□ 1.44
VPS13AQ96RL7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.04■■□□□ 1.44
VPS13AQ96RL7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
VPS13AQ96RL7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.04■■□□□ 1.44
VPS13AQ96RL7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC24.04■■□□□ 1.44
VPS13AQ96RL7 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
VPS13AQ96RL7 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC24.03■■□□□ 1.44
VPS13AQ96RL7 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS13AQ96RL7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS13AQ96RL7 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
VPS13AQ96RL7 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
VPS13AQ96RL7 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
VPS13AQ96RL7 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
VPS13AQ96RL7 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
VPS13AQ96RL7 ABCB10P1-201ENST00000614297 2181 ntBASIC24.02■■□□□ 1.44
VPS13AQ96RL7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC24.01■■□□□ 1.43
VPS13AQ96RL7 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC24■■□□□ 1.43
VPS13AQ96RL7 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
VPS13AQ96RL7 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
VPS13AQ96RL7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
VPS13AQ96RL7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS13AQ96RL7 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS13AQ96RL7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.99■■□□□ 1.43
VPS13AQ96RL7 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS13AQ96RL7 AC139426.1-201ENST00000568218 2529 ntBASIC23.99■■□□□ 1.43
VPS13AQ96RL7 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC23.99■■□□□ 1.43
VPS13AQ96RL7 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC23.98■■□□□ 1.43
VPS13AQ96RL7 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS13AQ96RL7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS13AQ96RL7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.98■■□□□ 1.43
VPS13AQ96RL7 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.98■■□□□ 1.43
VPS13AQ96RL7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 AL136967.2-201ENST00000623968 743 ntBASIC23.97■■□□□ 1.43
VPS13AQ96RL7 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
VPS13AQ96RL7 AC105265.2-201ENST00000467189 838 ntBASIC23.96■■□□□ 1.43
VPS13AQ96RL7 AL356740.2-201ENST00000601559 647 ntBASIC23.96■■□□□ 1.43
VPS13AQ96RL7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS13AQ96RL7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
VPS13AQ96RL7 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
VPS13AQ96RL7 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
VPS13AQ96RL7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS13AQ96RL7 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
VPS13AQ96RL7 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS13AQ96RL7 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms