Protein–RNA interactions for Protein: Q8NEM2

SHCBP1, SHC SH2 domain-binding protein 1, humanhuman

Predictions only

Length 672 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1Q8NEM2 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.5■■□□□ 1.99
SHCBP1Q8NEM2 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC27.49■■□□□ 1.99
SHCBP1Q8NEM2 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHCBP1Q8NEM2 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC27.49■■□□□ 1.99
SHCBP1Q8NEM2 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC27.49■■□□□ 1.99
SHCBP1Q8NEM2 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHCBP1Q8NEM2 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHCBP1Q8NEM2 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHCBP1Q8NEM2 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHCBP1Q8NEM2 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC27.48■■□□□ 1.99
SHCBP1Q8NEM2 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHCBP1Q8NEM2 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHCBP1Q8NEM2 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC27.47■■□□□ 1.99
SHCBP1Q8NEM2 AP004609.3-201ENST00000610705 1884 ntBASIC27.47■■□□□ 1.99
SHCBP1Q8NEM2 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHCBP1Q8NEM2 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC27.46■■□□□ 1.99
SHCBP1Q8NEM2 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHCBP1Q8NEM2 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC27.46■■□□□ 1.99
SHCBP1Q8NEM2 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC27.45■■□□□ 1.99
SHCBP1Q8NEM2 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.99
SHCBP1Q8NEM2 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC27.45■■□□□ 1.98
SHCBP1Q8NEM2 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC27.45■■□□□ 1.98
SHCBP1Q8NEM2 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC27.45■■□□□ 1.98
SHCBP1Q8NEM2 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC27.45■■□□□ 1.98
SHCBP1Q8NEM2 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC27.45■■□□□ 1.98
SHCBP1Q8NEM2 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHCBP1Q8NEM2 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC27.44■■□□□ 1.98
SHCBP1Q8NEM2 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SHCBP1Q8NEM2 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC27.44■■□□□ 1.98
SHCBP1Q8NEM2 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHCBP1Q8NEM2 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHCBP1Q8NEM2 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC27.43■■□□□ 1.98
SHCBP1Q8NEM2 PEMT-206ENST00000435340 960 ntTSL 5 BASIC27.43■■□□□ 1.98
SHCBP1Q8NEM2 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SHCBP1Q8NEM2 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC27.43■■□□□ 1.98
SHCBP1Q8NEM2 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
SHCBP1Q8NEM2 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
SHCBP1Q8NEM2 MIR4281-201ENST00000580852 62 ntBASIC27.42■■□□□ 1.98
SHCBP1Q8NEM2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC27.42■■□□□ 1.98
SHCBP1Q8NEM2 AC092028.1-203ENST00000608262 953 ntBASIC27.42■■□□□ 1.98
SHCBP1Q8NEM2 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
SHCBP1Q8NEM2 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC27.41■■□□□ 1.98
SHCBP1Q8NEM2 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC27.41■■□□□ 1.98
SHCBP1Q8NEM2 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHCBP1Q8NEM2 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SHCBP1Q8NEM2 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.98
SHCBP1Q8NEM2 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SHCBP1Q8NEM2 TSPY9P-201ENST00000440215 945 ntBASIC27.4■■□□□ 1.98
SHCBP1Q8NEM2 TSPY11P-201ENST00000442607 1045 ntBASIC27.4■■□□□ 1.98
SHCBP1Q8NEM2 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC27.39■■□□□ 1.98
SHCBP1Q8NEM2 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.97
SHCBP1Q8NEM2 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC27.39■■□□□ 1.97
SHCBP1Q8NEM2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC27.38■■□□□ 1.97
SHCBP1Q8NEM2 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHCBP1Q8NEM2 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHCBP1Q8NEM2 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
SHCBP1Q8NEM2 SHF-208ENST00000560734 1731 ntTSL 3 BASIC27.37■■□□□ 1.97
SHCBP1Q8NEM2 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SHCBP1Q8NEM2 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC27.36■■□□□ 1.97
SHCBP1Q8NEM2 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC27.36■■□□□ 1.97
SHCBP1Q8NEM2 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC27.36■■□□□ 1.97
SHCBP1Q8NEM2 AC011551.1-201ENST00000614101 683 ntBASIC27.36■■□□□ 1.97
SHCBP1Q8NEM2 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHCBP1Q8NEM2 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC27.35■■□□□ 1.97
SHCBP1Q8NEM2 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC27.35■■□□□ 1.97
SHCBP1Q8NEM2 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHCBP1Q8NEM2 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHCBP1Q8NEM2 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHCBP1Q8NEM2 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHCBP1Q8NEM2 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC27.34■■□□□ 1.97
SHCBP1Q8NEM2 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC27.34■■□□□ 1.97
SHCBP1Q8NEM2 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC27.34■■□□□ 1.97
SHCBP1Q8NEM2 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHCBP1Q8NEM2 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHCBP1Q8NEM2 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
SHCBP1Q8NEM2 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC27.33■■□□□ 1.97
SHCBP1Q8NEM2 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SHCBP1Q8NEM2 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
SHCBP1Q8NEM2 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC27.32■■□□□ 1.96
SHCBP1Q8NEM2 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHCBP1Q8NEM2 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHCBP1Q8NEM2 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
SHCBP1Q8NEM2 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
SHCBP1Q8NEM2 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
SHCBP1Q8NEM2 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC27.31■■□□□ 1.96
SHCBP1Q8NEM2 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHCBP1Q8NEM2 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC27.31■■□□□ 1.96
SHCBP1Q8NEM2 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
SHCBP1Q8NEM2 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHCBP1Q8NEM2 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHCBP1Q8NEM2 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHCBP1Q8NEM2 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHCBP1Q8NEM2 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHCBP1Q8NEM2 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.3■■□□□ 1.96
SHCBP1Q8NEM2 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHCBP1Q8NEM2 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SHCBP1Q8NEM2 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.29■■□□□ 1.96
SHCBP1Q8NEM2 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SHCBP1Q8NEM2 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SHCBP1Q8NEM2 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms