Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 KRT18P24-201ENST00000344739 1156 ntBASIC31.94■■■□□ 2.7
USHBP1Q8N6Y0 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
USHBP1Q8N6Y0 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC31.94■■■□□ 2.7
USHBP1Q8N6Y0 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
USHBP1Q8N6Y0 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
USHBP1Q8N6Y0 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
USHBP1Q8N6Y0 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
USHBP1Q8N6Y0 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.93■■■□□ 2.7
USHBP1Q8N6Y0 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USHBP1Q8N6Y0 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
USHBP1Q8N6Y0 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
USHBP1Q8N6Y0 KRT18P10-201ENST00000388836 1287 ntBASIC31.93■■■□□ 2.7
USHBP1Q8N6Y0 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
USHBP1Q8N6Y0 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC31.92■■■□□ 2.7
USHBP1Q8N6Y0 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC31.92■■■□□ 2.7
USHBP1Q8N6Y0 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC31.92■■■□□ 2.7
USHBP1Q8N6Y0 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
USHBP1Q8N6Y0 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.91■■■□□ 2.7
USHBP1Q8N6Y0 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
USHBP1Q8N6Y0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
USHBP1Q8N6Y0 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
USHBP1Q8N6Y0 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
USHBP1Q8N6Y0 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
USHBP1Q8N6Y0 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
USHBP1Q8N6Y0 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
USHBP1Q8N6Y0 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
USHBP1Q8N6Y0 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
USHBP1Q8N6Y0 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
USHBP1Q8N6Y0 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC31.88■■■□□ 2.69
USHBP1Q8N6Y0 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
USHBP1Q8N6Y0 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
USHBP1Q8N6Y0 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.87■■■□□ 2.69
USHBP1Q8N6Y0 TSPY9P-201ENST00000440215 945 ntBASIC31.87■■■□□ 2.69
USHBP1Q8N6Y0 TSPY11P-201ENST00000442607 1045 ntBASIC31.87■■■□□ 2.69
USHBP1Q8N6Y0 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC31.87■■■□□ 2.69
USHBP1Q8N6Y0 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
USHBP1Q8N6Y0 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC31.86■■■□□ 2.69
USHBP1Q8N6Y0 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC31.86■■■□□ 2.69
USHBP1Q8N6Y0 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC31.86■■■□□ 2.69
USHBP1Q8N6Y0 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC31.86■■■□□ 2.69
USHBP1Q8N6Y0 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC31.85■■■□□ 2.69
USHBP1Q8N6Y0 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
USHBP1Q8N6Y0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
USHBP1Q8N6Y0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
USHBP1Q8N6Y0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC31.84■■■□□ 2.69
USHBP1Q8N6Y0 KRT16P3-201ENST00000439127 1283 ntBASIC31.84■■■□□ 2.69
USHBP1Q8N6Y0 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC31.84■■■□□ 2.69
USHBP1Q8N6Y0 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC31.84■■■□□ 2.69
USHBP1Q8N6Y0 AC137630.3-201ENST00000607245 391 ntBASIC31.84■■■□□ 2.69
USHBP1Q8N6Y0 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
USHBP1Q8N6Y0 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.83■■■□□ 2.69
USHBP1Q8N6Y0 AC008406.3-201ENST00000620001 1374 ntBASIC31.83■■■□□ 2.69
USHBP1Q8N6Y0 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC31.83■■■□□ 2.69
USHBP1Q8N6Y0 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
USHBP1Q8N6Y0 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
USHBP1Q8N6Y0 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
USHBP1Q8N6Y0 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
USHBP1Q8N6Y0 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC31.82■■■□□ 2.68
USHBP1Q8N6Y0 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
USHBP1Q8N6Y0 LSM7-203ENST00000585409 512 ntTSL 2 BASIC31.81■■■□□ 2.68
USHBP1Q8N6Y0 AC142086.6-201ENST00000621154 1765 ntBASIC31.81■■■□□ 2.68
USHBP1Q8N6Y0 AC021242.3-201ENST00000607598 1377 ntBASIC31.81■■■□□ 2.68
USHBP1Q8N6Y0 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC31.8■■■□□ 2.68
USHBP1Q8N6Y0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USHBP1Q8N6Y0 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC31.8■■■□□ 2.68
USHBP1Q8N6Y0 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USHBP1Q8N6Y0 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
USHBP1Q8N6Y0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC31.78■■■□□ 2.68
USHBP1Q8N6Y0 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC31.78■■■□□ 2.68
USHBP1Q8N6Y0 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
USHBP1Q8N6Y0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
USHBP1Q8N6Y0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC31.77■■■□□ 2.68
USHBP1Q8N6Y0 MIR4281-201ENST00000580852 62 ntBASIC31.77■■■□□ 2.68
USHBP1Q8N6Y0 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
USHBP1Q8N6Y0 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
USHBP1Q8N6Y0 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC31.76■■■□□ 2.68
USHBP1Q8N6Y0 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.67
USHBP1Q8N6Y0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC31.76■■■□□ 2.67
USHBP1Q8N6Y0 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC31.76■■■□□ 2.67
USHBP1Q8N6Y0 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.67
USHBP1Q8N6Y0 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USHBP1Q8N6Y0 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC31.75■■■□□ 2.67
USHBP1Q8N6Y0 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USHBP1Q8N6Y0 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC31.75■■■□□ 2.67
USHBP1Q8N6Y0 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
USHBP1Q8N6Y0 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
USHBP1Q8N6Y0 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USHBP1Q8N6Y0 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC31.75■■■□□ 2.67
USHBP1Q8N6Y0 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
USHBP1Q8N6Y0 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
USHBP1Q8N6Y0 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms