Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 MEX3C-201ENST00000406189 3781 ntAPPRIS P2 TSL 1 (best)15.74■□□□□ 0.111e-8■■■■■ 27.3
LSM11P83369 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.111e-8■■■■■ 27.3
LSM11P83369 MYO18A-205ENST00000529578 2667 ntTSL 212.02□□□□□ -0.491e-8■■■■■ 27.3
LSM11P83369 MYO18A-207ENST00000530254 6479 ntTSL 1 (best)11.63□□□□□ -0.551e-8■■■■■ 27.3
LSM11P83369 TIAF1-201ENST00000359450 5337 ntAPPRIS P1 BASIC10.92□□□□□ -0.661e-8■■■■■ 27.3
LSM11P83369 MARCH6-208ENST00000510792 1963 ntTSL 2 BASIC10.05□□□□□ -0.81e-8■■■■■ 27.3
LSM11P83369 MYO18A-209ENST00000531253 7504 ntAPPRIS ALT1 TSL 5 BASIC9.87□□□□□ -0.831e-8■■■■■ 27.3
LSM11P83369 MYO18A-223ENST00000628822 7501 ntAPPRIS ALT1 TSL 5 BASIC9.79□□□□□ -0.841e-8■■■■■ 27.3
LSM11P83369 MYO18A-202ENST00000527372 9992 ntAPPRIS P4 TSL 1 (best) BASIC9.59□□□□□ -0.871e-8■■■■■ 27.3
LSM11P83369 MYO18A-214ENST00000533112 7522 ntTSL 1 (best) BASIC9.54□□□□□ -0.881e-8■■■■■ 27.3
LSM11P83369 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.421e-6■■■■■ 27.3
LSM11P83369 CAPN15-208ENST00000637507 1482 ntTSL 519.59■□□□□ 0.735e-7■■■■■ 27.2
LSM11P83369 SDF4-207ENST00000494748 3516 ntTSL 214.57□□□□□ -0.088e-7■■■■■ 27.1
LSM11P83369 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.271e-7■■■■■ 27.1
LSM11P83369 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.93■□□□□ 0.141e-7■■■■■ 27.1
LSM11P83369 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.111e-7■■■■■ 27.1
LSM11P83369 CXXC1-214ENST00000590901 2562 ntTSL 214.38□□□□□ -0.111e-7■■■■■ 27.1
LSM11P83369 CXXC1-209ENST00000587342 802 ntTSL 213.98□□□□□ -0.171e-7■■■■■ 27.1
LSM11P83369 ACTB-211ENST00000480301 657 ntTSL 1 (best)18.38■□□□□ 0.539e-19■■■■■ 27
LSM11P83369 ACTB-210ENST00000477812 820 ntTSL 217.88■□□□□ 0.459e-19■■■■■ 27
LSM11P83369 ACTB-212ENST00000484841 1032 ntTSL 517.56■□□□□ 0.49e-19■■■■■ 27
LSM11P83369 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.269e-19■■■■■ 27
LSM11P83369 ACTB-207ENST00000462494 2245 ntTSL 516■□□□□ 0.159e-19■■■■■ 27
LSM11P83369 ACTB-205ENST00000432588 568 ntTSL 414.11□□□□□ -0.159e-19■■■■■ 27
LSM11P83369 ACTB-204ENST00000425660 1845 ntTSL 1 (best)14.02□□□□□ -0.169e-19■■■■■ 27
LSM11P83369 ACTB-206ENST00000443528 569 ntTSL 413.84□□□□□ -0.199e-19■■■■■ 27
LSM11P83369 ACTB-202ENST00000414620 561 ntTSL 413.47□□□□□ -0.259e-19■■■■■ 27
LSM11P83369 ACTB-209ENST00000473257 556 ntTSL 39.79□□□□□ -0.849e-19■■■■■ 27
LSM11P83369 IRAK1-201ENST00000369973 2358 ntTSL 523.01■■□□□ 1.273e-6■■■■■ 27
LSM11P83369 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.93■■□□□ 1.263e-6■■■■■ 27
LSM11P83369 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.923e-6■■■■■ 27
LSM11P83369 TCHP-206ENST00000544838 2077 ntTSL 219.58■□□□□ 0.723e-6■■■■■ 27
LSM11P83369 PEAK1-206ENST00000564328 2323 ntTSL 518.85■□□□□ 0.613e-6■■■■■ 27
LSM11P83369 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.53e-6■■■■■ 27
LSM11P83369 PEAK1-209ENST00000567808 520 ntTSL 318.05■□□□□ 0.483e-6■■■■■ 27
LSM11P83369 IRAK1-210ENST00000455690 784 ntTSL 317.56■□□□□ 0.43e-6■■■■■ 27
LSM11P83369 KIF2A-207ENST00000509663 759 ntTSL 316.94■□□□□ 0.33e-6■■■■■ 27
LSM11P83369 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.263e-6■■■■■ 27
LSM11P83369 TUBGCP2-205ENST00000470829 799 ntTSL 216.67■□□□□ 0.263e-6■■■■■ 27
LSM11P83369 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.243e-6■■■■■ 27
LSM11P83369 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.213e-6■■■■■ 27
LSM11P83369 DUS3L-208ENST00000590110 977 ntTSL 215.91■□□□□ 0.143e-6■■■■■ 27
LSM11P83369 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.132e-11■■■■■ 27
LSM11P83369 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.36■□□□□ 0.053e-6■■■■■ 27
LSM11P83369 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.043e-6■■■■■ 27
LSM11P83369 STX17-202ENST00000524405 941 ntTSL 515.31■□□□□ 0.043e-6■■■■■ 27
LSM11P83369 IRAK1-208ENST00000444230 1125 ntTSL 515.04■□□□□ -03e-6■■■■■ 27
LSM11P83369 TUBGCP2-207ENST00000480198 1306 ntTSL 214.9□□□□□ -0.023e-6■■■■■ 27
LSM11P83369 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.81□□□□□ -0.042e-6■■■■■ 27
LSM11P83369 JMJD7-204ENST00000431823 828 ntTSL 514.66□□□□□ -0.062e-11■■■■■ 27
LSM11P83369 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.64□□□□□ -0.072e-11■■■■■ 27
LSM11P83369 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.12e-6■■■■■ 27
LSM11P83369 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.12e-11■■■■■ 27
LSM11P83369 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.133e-6■■■■■ 27
LSM11P83369 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.173e-6■■■■■ 27
LSM11P83369 DUS3L-204ENST00000589085 2301 ntTSL 513.99□□□□□ -0.173e-6■■■■■ 27
LSM11P83369 TCHP-208ENST00000549550 465 ntTSL 313.62□□□□□ -0.233e-6■■■■■ 27
LSM11P83369 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.312e-11■■■■■ 27
LSM11P83369 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.343e-6■■■■■ 27
LSM11P83369 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.363e-6■■■■■ 27
LSM11P83369 JMJD7-PLA2G4B-205ENST00000490848 7218 ntTSL 212.81□□□□□ -0.362e-11■■■■■ 27
LSM11P83369 RSRC2-204ENST00000433877 1956 ntTSL 212.76□□□□□ -0.377e-22■■■■■ 27
LSM11P83369 IRAK1-207ENST00000443220 1175 ntTSL 212.66□□□□□ -0.383e-6■■■■■ 27
LSM11P83369 RSRC2-212ENST00000527399 1041 ntTSL 512.58□□□□□ -0.47e-22■■■■■ 27
LSM11P83369 STX17-203ENST00000525342 675 ntTSL 512.39□□□□□ -0.433e-6■■■■■ 27
LSM11P83369 IRAK1-206ENST00000437278 862 ntTSL 512.16□□□□□ -0.463e-6■■■■■ 27
LSM11P83369 ELOVL1-216ENST00000621943 1625 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.472e-11■■■■■ 27
LSM11P83369 SLC10A7-208ENST00000511374 869 ntTSL 1 (best) BASIC12.06□□□□□ -0.483e-6■■■■■ 27
LSM11P83369 RSRC2-205ENST00000524399 625 ntTSL 212.04□□□□□ -0.487e-22■■■■■ 27
LSM11P83369 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC11.95□□□□□ -0.52e-6■■■■■ 27
LSM11P83369 JMJD7-202ENST00000405106 330 ntTSL 511.8□□□□□ -0.522e-11■■■■■ 27
LSM11P83369 SLC10A7-205ENST00000507030 1134 ntTSL 1 (best) BASIC11.79□□□□□ -0.523e-6■■■■■ 27
LSM11P83369 JMJD7-PLA2G4B-202ENST00000382448 3331 ntAPPRIS P3 TSL 2 BASIC11.63□□□□□ -0.552e-11■■■■■ 27
LSM11P83369 STX17-208ENST00000529340 858 ntTSL 1 (best)11.46□□□□□ -0.573e-6■■■■■ 27
LSM11P83369 STX17-211ENST00000533696 611 ntTSL 311.44□□□□□ -0.583e-6■■■■■ 27
LSM11P83369 PITPNC1-206ENST00000584471 713 ntTSL 511.4□□□□□ -0.583e-6■■■■■ 27
LSM11P83369 IRAK1-202ENST00000369974 3319 ntTSL 1 (best) BASIC11.39□□□□□ -0.593e-6■■■■■ 27
LSM11P83369 IRAK1-213ENST00000477274 705 ntTSL 511.36□□□□□ -0.593e-6■■■■■ 27
LSM11P83369 JMJD7-PLA2G4B-201ENST00000342159 2966 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.62e-11■■■■■ 27
LSM11P83369 TCHP-202ENST00000405876 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.613e-6■■■■■ 27
LSM11P83369 FLJ46284-202ENST00000521148 496 ntTSL 3 BASIC11.16□□□□□ -0.623e-6■■■■■ 27
LSM11P83369 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC11.12□□□□□ -0.633e-6■■■■■ 27
LSM11P83369 TUBGCP2-208ENST00000482278 3553 ntTSL 211.09□□□□□ -0.632e-6■■■■■ 27
LSM11P83369 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.643e-6■■■■■ 27
LSM11P83369 RSRC2-202ENST00000344591 936 ntTSL 210.8□□□□□ -0.687e-22■■■■■ 27
LSM11P83369 SLC10A7-206ENST00000507560 414 ntTSL 510.79□□□□□ -0.683e-6■■■■■ 27
LSM11P83369 KIFAP3-206ENST00000538366 3159 ntTSL 2 BASIC10.77□□□□□ -0.693e-6■■■■■ 27
LSM11P83369 JMJD7-PLA2G4B-206ENST00000491746 7227 ntTSL 210.77□□□□□ -0.692e-11■■■■■ 27
LSM11P83369 SEC16A-207ENST00000453963 4834 ntAPPRIS ALT2 TSL 1 (best)10.68□□□□□ -0.73e-6■■■■■ 27
LSM11P83369 RSRC2-220ENST00000532695 2001 ntTSL 210.63□□□□□ -0.717e-22■■■■■ 27
LSM11P83369 ELOVL1-202ENST00000413844 1451 ntTSL 2 BASIC10.59□□□□□ -0.712e-11■■■■■ 27
LSM11P83369 TCHP-201ENST00000312777 3151 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.723e-6■■■■■ 27
LSM11P83369 KIF2A-201ENST00000381103 3360 ntTSL 1 (best) BASIC10.46□□□□□ -0.733e-6■■■■■ 27
LSM11P83369 KIFAP3-201ENST00000361580 2957 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.753e-6■■■■■ 27
LSM11P83369 TUBGCP2-209ENST00000487796 1092 ntTSL 510.31□□□□□ -0.763e-6■■■■■ 27
LSM11P83369 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC10.25□□□□□ -0.773e-6■■■■■ 27
LSM11P83369 SEC16A-206ENST00000431893 6465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.773e-6■■■■■ 27
LSM11P83369 TCHP-210ENST00000551627 581 ntTSL 210.15□□□□□ -0.783e-6■■■■■ 27
LSM11P83369 RSRC2-207ENST00000525335 1146 ntTSL 510.12□□□□□ -0.797e-22■■■■■ 27
LSM11P83369 STX17-201ENST00000259400 2713 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.793e-6■■■■■ 27
Retrieved 100 of 11,495 protein–RNA pairs in 72.8 ms