Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC29.75■■■□□ 2.35
COL4A1P02462 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.35
COL4A1P02462 GRAMD4P7-201ENST00000578182 1232 ntBASIC29.75■■■□□ 2.35
COL4A1P02462 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC29.74■■■□□ 2.35
COL4A1P02462 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
COL4A1P02462 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC29.74■■■□□ 2.35
COL4A1P02462 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
COL4A1P02462 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
COL4A1P02462 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC29.74■■■□□ 2.35
COL4A1P02462 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
COL4A1P02462 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
COL4A1P02462 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC29.73■■■□□ 2.35
COL4A1P02462 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC29.73■■■□□ 2.35
COL4A1P02462 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC29.73■■■□□ 2.35
COL4A1P02462 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC29.72■■■□□ 2.35
COL4A1P02462 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC29.72■■■□□ 2.35
COL4A1P02462 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC29.72■■■□□ 2.35
COL4A1P02462 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC29.72■■■□□ 2.35
COL4A1P02462 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC29.72■■■□□ 2.35
COL4A1P02462 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC29.72■■■□□ 2.35
COL4A1P02462 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC29.72■■■□□ 2.35
COL4A1P02462 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL4A1P02462 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
COL4A1P02462 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC29.71■■■□□ 2.35
COL4A1P02462 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
COL4A1P02462 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL4A1P02462 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC29.71■■■□□ 2.35
COL4A1P02462 AC120024.1-201ENST00000562672 995 ntBASIC29.7■■■□□ 2.35
COL4A1P02462 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
COL4A1P02462 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC29.7■■■□□ 2.34
COL4A1P02462 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC29.7■■■□□ 2.34
COL4A1P02462 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
COL4A1P02462 MIR4787-201ENST00000607364 84 ntBASIC29.69■■■□□ 2.34
COL4A1P02462 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
COL4A1P02462 AC019069.1-201ENST00000610008 1333 ntBASIC29.69■■■□□ 2.34
COL4A1P02462 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
COL4A1P02462 MIR4281-201ENST00000580852 62 ntBASIC29.69■■■□□ 2.34
COL4A1P02462 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
COL4A1P02462 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.68■■■□□ 2.34
COL4A1P02462 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
COL4A1P02462 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
COL4A1P02462 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC29.68■■■□□ 2.34
COL4A1P02462 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC29.68■■■□□ 2.34
COL4A1P02462 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
COL4A1P02462 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
COL4A1P02462 KRT18P24-201ENST00000344739 1156 ntBASIC29.67■■■□□ 2.34
COL4A1P02462 AC022616.5-201ENST00000518796 181 ntBASIC29.67■■■□□ 2.34
COL4A1P02462 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
COL4A1P02462 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC29.66■■■□□ 2.34
COL4A1P02462 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC29.66■■■□□ 2.34
COL4A1P02462 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
COL4A1P02462 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC29.66■■■□□ 2.34
COL4A1P02462 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
COL4A1P02462 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
COL4A1P02462 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC29.66■■■□□ 2.34
COL4A1P02462 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
COL4A1P02462 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
COL4A1P02462 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
COL4A1P02462 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
COL4A1P02462 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC29.65■■■□□ 2.34
COL4A1P02462 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
COL4A1P02462 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC29.65■■■□□ 2.34
COL4A1P02462 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
COL4A1P02462 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
COL4A1P02462 BX664725.1-201ENST00000438252 379 ntBASIC29.65■■■□□ 2.34
COL4A1P02462 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC29.65■■■□□ 2.34
COL4A1P02462 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC29.65■■■□□ 2.34
COL4A1P02462 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
COL4A1P02462 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
COL4A1P02462 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
COL4A1P02462 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC29.64■■■□□ 2.33
COL4A1P02462 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
COL4A1P02462 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC29.63■■■□□ 2.33
COL4A1P02462 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC29.63■■■□□ 2.33
COL4A1P02462 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC29.63■■■□□ 2.33
COL4A1P02462 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC29.63■■■□□ 2.33
COL4A1P02462 LSM7-203ENST00000585409 512 ntTSL 2 BASIC29.63■■■□□ 2.33
COL4A1P02462 AC137630.3-201ENST00000607245 391 ntBASIC29.62■■■□□ 2.33
COL4A1P02462 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC29.62■■■□□ 2.33
COL4A1P02462 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
COL4A1P02462 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC29.61■■■□□ 2.33
COL4A1P02462 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC29.61■■■□□ 2.33
COL4A1P02462 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC29.61■■■□□ 2.33
COL4A1P02462 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
COL4A1P02462 SENP5-202ENST00000419026 973 ntTSL 3 BASIC29.6■■■□□ 2.33
COL4A1P02462 KRT16P3-201ENST00000439127 1283 ntBASIC29.6■■■□□ 2.33
COL4A1P02462 AC021242.3-201ENST00000607598 1377 ntBASIC29.6■■■□□ 2.33
COL4A1P02462 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
COL4A1P02462 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC29.6■■■□□ 2.33
COL4A1P02462 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
COL4A1P02462 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
COL4A1P02462 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC29.6■■■□□ 2.33
COL4A1P02462 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
COL4A1P02462 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
COL4A1P02462 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC29.59■■■□□ 2.33
COL4A1P02462 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
COL4A1P02462 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
COL4A1P02462 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC29.58■■■□□ 2.33
COL4A1P02462 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC29.58■■■□□ 2.33
COL4A1P02462 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms