Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV1-1A0A0B4J248 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV1-1A0A0B4J248 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV1-1A0A0B4J248 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TRAV1-1A0A0B4J248 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV1-1A0A0B4J248 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
TRAV1-1A0A0B4J248 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.71■□□□□ 0.59
TRAV1-1A0A0B4J248 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV1-1A0A0B4J248 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 PEX7-203ENST00000541292 945 ntTSL 5 BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 AL391121.1-201ENST00000607967 1349 ntBASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV1-1A0A0B4J248 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV1-1A0A0B4J248 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV1-1A0A0B4J248 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 SLC6A10P-202ENST00000431994 2058 ntBASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV1-1A0A0B4J248 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
TRAV1-1A0A0B4J248 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TRAV1-1A0A0B4J248 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV1-1A0A0B4J248 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.66■□□□□ 0.58
TRAV1-1A0A0B4J248 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV1-1A0A0B4J248 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV1-1A0A0B4J248 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.66■□□□□ 0.58
TRAV1-1A0A0B4J248 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRAV1-1A0A0B4J248 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.66■□□□□ 0.58
TRAV1-1A0A0B4J248 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 AC004812.2-201ENST00000611079 2094 ntBASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TRAV1-1A0A0B4J248 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TRAV1-1A0A0B4J248 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRAV1-1A0A0B4J248 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV1-1A0A0B4J248 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAV1-1A0A0B4J248 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV1-1A0A0B4J248 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV1-1A0A0B4J248 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
TRAV1-1A0A0B4J248 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV1-1A0A0B4J248 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.63■□□□□ 0.57
TRAV1-1A0A0B4J248 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV1-1A0A0B4J248 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV1-1A0A0B4J248 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV1-1A0A0B4J248 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRAV1-1A0A0B4J248 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV1-1A0A0B4J248 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRAV1-1A0A0B4J248 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV1-1A0A0B4J248 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.62■□□□□ 0.57
TRAV1-1A0A0B4J248 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TRAV1-1A0A0B4J248 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV1-1A0A0B4J248 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAV1-1A0A0B4J248 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAV1-1A0A0B4J248 AC110285.7-201ENST00000624417 1536 ntBASIC18.62■□□□□ 0.57
TRAV1-1A0A0B4J248 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV1-1A0A0B4J248 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms